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Results: 1 to 20 of 61


Standard filtration practices may significantly distort planktonic microbial diversity estimates.

Padilla CC, Ganesh S, Gantt S, Huhman A, Parris DJ, Sarode N, Stewart FJ.

Front Microbiol. 2015 Jun 2;6:547. doi: 10.3389/fmicb.2015.00547. eCollection 2015.


The roles of visual parallax and edge attraction in the foraging behaviour of the butterfly Papilio xuthus.

Stewart FJ, Kinoshita M, Arikawa K.

J Exp Biol. 2015 Jun;218(Pt 11):1725-32. doi: 10.1242/jeb.115063. Epub 2015 Apr 16.


Size-fractionated diversity of eukaryotic microbial communities in the Eastern Tropical North Pacific oxygen minimum zone.

Duret MT, Pachiadaki MG, Stewart FJ, Sarode N, Christaki U, Monchy S, Srivastava A, Edgcomb VP.

FEMS Microbiol Ecol. 2015 May;91(5). pii: fiv037. doi: 10.1093/femsec/fiv037. Epub 2015 Apr 1.


Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone.

Ganesh S, Bristow LA, Larsen M, Sarode N, Thamdrup B, Stewart FJ.

ISME J. 2015 Apr 7. doi: 10.1038/ismej.2015.44. [Epub ahead of print]


Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile.

Parris DJ, Ganesh S, Edgcomb VP, DeLong EF, Stewart FJ.

Front Microbiol. 2014 Oct 28;5:543. doi: 10.3389/fmicb.2014.00543. eCollection 2014.


Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile.

Dalsgaard T, Stewart FJ, Thamdrup B, De Brabandere L, Revsbech NP, Ulloa O, Canfield DE, DeLong EF.

MBio. 2014 Oct 28;5(6):e01966. doi: 10.1128/mBio.01966-14.


The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis.

Dmytrenko O, Russell SL, Loo WT, Fontanez KM, Liao L, Roeselers G, Sharma R, Stewart FJ, Newton IL, Woyke T, Wu D, Lang JM, Eisen JA, Cavanaugh CM.

BMC Genomics. 2014 Oct 23;15:924. doi: 10.1186/1471-2164-15-924.


Saccharide breakdown and fermentation by the honey bee gut microbiome.

Lee FJ, Rusch DB, Stewart FJ, Mattila HR, Newton IL.

Environ Microbiol. 2015 Mar;17(3):796-815. doi: 10.1111/1462-2920.12526. Epub 2014 Jul 8.


CRISPR/Cas9 systems have off-target activity with insertions or deletions between target DNA and guide RNA sequences.

Lin Y, Cradick TJ, Brown MT, Deshmukh H, Ranjan P, Sarode N, Wile BM, Vertino PM, Stewart FJ, Bao G.

Nucleic Acids Res. 2014 Jun;42(11):7473-85. doi: 10.1093/nar/gku402. Epub 2014 May 16.


A method for selectively enriching microbial DNA from contaminating vertebrate host DNA.

Feehery GR, Yigit E, Oyola SO, Langhorst BW, Schmidt VT, Stewart FJ, Dimalanta ET, Amaral-Zettler LA, Davis T, Quail MA, Pradhan S.

PLoS One. 2013 Oct 28;8(10):e76096. doi: 10.1371/journal.pone.0076096. eCollection 2013.


Preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton.

Stewart FJ.

Methods Enzymol. 2013;531:187-218. doi: 10.1016/B978-0-12-407863-5.00010-1.


Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone.

Ganesh S, Parris DJ, DeLong EF, Stewart FJ.

ISME J. 2014 Jan;8(1):187-211. doi: 10.1038/ismej.2013.144. Epub 2013 Sep 12.


Genetic biomarkers in aortopathy.

Rea G, Stewart FJ.

Biomark Med. 2013 Aug;7(4):547-63. doi: 10.2217/bmm.13.74. Review.


Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts.

Sanders JG, Beinart RA, Stewart FJ, Delong EF, Girguis PR.

ISME J. 2013 Aug;7(8):1556-67. doi: 10.1038/ismej.2013.45. Epub 2013 Apr 25.


Reduced dosage of ERF causes complex craniosynostosis in humans and mice and links ERK1/2 signaling to regulation of osteogenesis.

Twigg SR, Vorgia E, McGowan SJ, Peraki I, Fenwick AL, Sharma VP, Allegra M, Zaragkoulias A, Sadighi Akha E, Knight SJ, Lord H, Lester T, Izatt L, Lampe AK, Mohammed SN, Stewart FJ, Verloes A, Wilson LC, Healy C, Sharpe PT, Hammond P, Hughes J, Taylor S, Johnson D, Wall SA, Mavrothalassitis G, Wilkie AO.

Nat Genet. 2013 Mar;45(3):308-13. doi: 10.1038/ng.2539. Epub 2013 Jan 27.


Microbial oceanography of anoxic oxygen minimum zones.

Ulloa O, Canfield DE, DeLong EF, Letelier RM, Stewart FJ.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):15996-6003. doi: 10.1073/pnas.1205009109. Epub 2012 Sep 11. Review.


Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone.

Bryant JA, Stewart FJ, Eppley JM, DeLong EF.

Ecology. 2012 Jul;93(7):1659-73.


Experimental incubations elicit profound changes in community transcription in OMZ bacterioplankton.

Stewart FJ, Dalsgaard T, Young CR, Thamdrup B, Revsbech NP, Ulloa O, Canfield DE, Delong EF.

PLoS One. 2012;7(5):e37118. doi: 10.1371/journal.pone.0037118. Epub 2012 May 16.


Dissimilatory sulfur cycling in oxygen minimum zones: an emerging metagenomics perspective.

Stewart FJ.

Biochem Soc Trans. 2011 Dec;39(6):1859-63. doi: 10.1042/BST20110708. Review.


Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum.

Stewart FJ, Dmytrenko O, Delong EF, Cavanaugh CM.

Front Microbiol. 2011 Jun 20;2:134. doi: 10.3389/fmicb.2011.00134. eCollection 2011.

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