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Results: 1 to 20 of 57

1.

Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile.

Parris DJ, Ganesh S, Edgcomb VP, DeLong EF, Stewart FJ.

Front Microbiol. 2014 Oct 28;5:543. doi: 10.3389/fmicb.2014.00543. eCollection 2014.

PMID:
25389417
[PubMed]
Free PMC Article
2.

Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile.

Dalsgaard T, Stewart FJ, Thamdrup B, De Brabandere L, Revsbech NP, Ulloa O, Canfield DE, DeLong EF.

MBio. 2014 Oct 28;5(6):e01966. doi: 10.1128/mBio.01966-14.

PMID:
25352619
[PubMed - in process]
Free PMC Article
3.

The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis.

Dmytrenko O, Russell SL, Loo WT, Fontanez KM, Liao L, Roeselers G, Sharma R, Stewart FJ, Newton IL, Woyke T, Wu D, Lang JM, Eisen JA, Cavanaugh CM.

BMC Genomics. 2014 Oct 23;15:924. doi: 10.1186/1471-2164-15-924.

PMID:
25342549
[PubMed - in process]
Free PMC Article
4.

Saccharide breakdown and fermentation by the honey bee gut microbiome.

Lee FJ, Rusch DB, Stewart FJ, Mattila HR, Newton IL.

Environ Microbiol. 2014 Jun 6. doi: 10.1111/1462-2920.12526. [Epub ahead of print]

PMID:
24905222
[PubMed - as supplied by publisher]
5.

CRISPR/Cas9 systems have off-target activity with insertions or deletions between target DNA and guide RNA sequences.

Lin Y, Cradick TJ, Brown MT, Deshmukh H, Ranjan P, Sarode N, Wile BM, Vertino PM, Stewart FJ, Bao G.

Nucleic Acids Res. 2014 Jun;42(11):7473-85. doi: 10.1093/nar/gku402. Epub 2014 May 16.

PMID:
24838573
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A method for selectively enriching microbial DNA from contaminating vertebrate host DNA.

Feehery GR, Yigit E, Oyola SO, Langhorst BW, Schmidt VT, Stewart FJ, Dimalanta ET, Amaral-Zettler LA, Davis T, Quail MA, Pradhan S.

PLoS One. 2013 Oct 28;8(10):e76096. doi: 10.1371/journal.pone.0076096. eCollection 2013.

PMID:
24204593
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton.

Stewart FJ.

Methods Enzymol. 2013;531:187-218. doi: 10.1016/B978-0-12-407863-5.00010-1.

PMID:
24060122
[PubMed - indexed for MEDLINE]
8.

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone.

Ganesh S, Parris DJ, DeLong EF, Stewart FJ.

ISME J. 2014 Jan;8(1):187-211. doi: 10.1038/ismej.2013.144. Epub 2013 Sep 12.

PMID:
24030599
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genetic biomarkers in aortopathy.

Rea G, Stewart FJ.

Biomark Med. 2013 Aug;7(4):547-63. doi: 10.2217/bmm.13.74. Review.

PMID:
23905890
[PubMed - indexed for MEDLINE]
10.

Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts.

Sanders JG, Beinart RA, Stewart FJ, Delong EF, Girguis PR.

ISME J. 2013 Aug;7(8):1556-67. doi: 10.1038/ismej.2013.45. Epub 2013 Apr 25.

PMID:
23619306
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Reduced dosage of ERF causes complex craniosynostosis in humans and mice and links ERK1/2 signaling to regulation of osteogenesis.

Twigg SR, Vorgia E, McGowan SJ, Peraki I, Fenwick AL, Sharma VP, Allegra M, Zaragkoulias A, Sadighi Akha E, Knight SJ, Lord H, Lester T, Izatt L, Lampe AK, Mohammed SN, Stewart FJ, Verloes A, Wilson LC, Healy C, Sharpe PT, Hammond P, Hughes J, Taylor S, Johnson D, Wall SA, Mavrothalassitis G, Wilkie AO.

Nat Genet. 2013 Mar;45(3):308-13. doi: 10.1038/ng.2539. Epub 2013 Jan 27.

PMID:
23354439
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Microbial oceanography of anoxic oxygen minimum zones.

Ulloa O, Canfield DE, DeLong EF, Letelier RM, Stewart FJ.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):15996-6003. doi: 10.1073/pnas.1205009109. Epub 2012 Sep 11. Review.

PMID:
22967509
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone.

Bryant JA, Stewart FJ, Eppley JM, DeLong EF.

Ecology. 2012 Jul;93(7):1659-73.

PMID:
22919912
[PubMed - indexed for MEDLINE]
14.

Experimental incubations elicit profound changes in community transcription in OMZ bacterioplankton.

Stewart FJ, Dalsgaard T, Young CR, Thamdrup B, Revsbech NP, Ulloa O, Canfield DE, Delong EF.

PLoS One. 2012;7(5):e37118. doi: 10.1371/journal.pone.0037118. Epub 2012 May 16.

PMID:
22615914
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Dissimilatory sulfur cycling in oxygen minimum zones: an emerging metagenomics perspective.

Stewart FJ.

Biochem Soc Trans. 2011 Dec;39(6):1859-63. doi: 10.1042/BST20110708. Review.

PMID:
22103540
[PubMed - indexed for MEDLINE]
16.

Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum.

Stewart FJ, Dmytrenko O, Delong EF, Cavanaugh CM.

Front Microbiol. 2011 Jun 20;2:134. doi: 10.3389/fmicb.2011.00134. eCollection 2011.

PMID:
21738524
[PubMed]
Free PMC Article
17.

Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities.

Stewart FJ, Sharma AK, Bryant JA, Eppley JM, DeLong EF.

Genome Biol. 2011;12(3):R26. doi: 10.1186/gb-2011-12-3-r26. Epub 2011 Mar 22.

PMID:
21426537
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Complete genome sequence of Candidatus Ruthia magnifica.

Roeselers G, Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC, Fontanez KM, Lau E, Stewart FJ, Richardson PM, Barry KW, Saunders E, Detter JC, Wu D, Eisen JA, Cavanaugh CM.

Stand Genomic Sci. 2010 Oct 27;3(2):163-73. doi: 10.4056/sigs.1103048.

PMID:
21304746
[PubMed]
Free PMC Article
19.

Microbial metatranscriptomics in a permanent marine oxygen minimum zone.

Stewart FJ, Ulloa O, DeLong EF.

Environ Microbiol. 2012 Jan;14(1):23-40. doi: 10.1111/j.1462-2920.2010.02400.x. Epub 2011 Jan 7.

PMID:
21210935
[PubMed - indexed for MEDLINE]
20.

A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast.

Canfield DE, Stewart FJ, Thamdrup B, De Brabandere L, Dalsgaard T, Delong EF, Revsbech NP, Ulloa O.

Science. 2010 Dec 3;330(6009):1375-8. doi: 10.1126/science.1196889. Epub 2010 Nov 11.

PMID:
21071631
[PubMed - indexed for MEDLINE]
Free Article
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