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Results: 1 to 20 of 41

1.

Elucidating the adaptation and temporal coordination of metabolic pathways using in-silico evolution.

Gottstein W, Müller S, Herzel H, Steuer R.

Biosystems. 2014 Mar;117:68-76. doi: 10.1016/j.biosystems.2013.12.006. Epub 2014 Jan 15.

PMID:
24440082
[PubMed - in process]
2.

Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes.

Müller S, Regensburger G, Steuer R.

J Theor Biol. 2014 Apr 21;347:182-90. doi: 10.1016/j.jtbi.2013.11.015. Epub 2013 Dec 1.

PMID:
24295962
[PubMed - in process]
3.

Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis sp. PCC 6803.

Knoop H, Gründel M, Zilliges Y, Lehmann R, Hoffmann S, Lockau W, Steuer R.

PLoS Comput Biol. 2013;9(6):e1003081. doi: 10.1371/journal.pcbi.1003081. Epub 2013 Jun 27.

PMID:
23843751
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis.

Lehmann R, Machné R, Georg J, Benary M, Axmann I, Steuer R.

BMC Bioinformatics. 2013 Apr 21;14:133. doi: 10.1186/1471-2105-14-133.

PMID:
23601192
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Physiological tolerance and stoichiometric potential of cyanobacteria for hydrocarbon fuel production.

Kämäräinen J, Knoop H, Stanford NJ, Guerrero F, Akhtar MK, Aro EM, Steuer R, Jones PR.

J Biotechnol. 2012 Nov 30;162(1):67-74. doi: 10.1016/j.jbiotec.2012.07.193. Epub 2012 Aug 29.

PMID:
22954891
[PubMed - indexed for MEDLINE]
6.

Modelling cyanobacteria: from metabolism to integrative models of phototrophic growth.

Steuer R, Knoop H, Machné R.

J Exp Bot. 2012 Mar;63(6):2259-74. doi: 10.1093/jxb/ers018. Review.

PMID:
22450165
[PubMed - indexed for MEDLINE]
Free Article
7.

The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms.

Beck C, Knoop H, Axmann IM, Steuer R.

BMC Genomics. 2012 Feb 2;13:56. doi: 10.1186/1471-2164-13-56.

PMID:
22300633
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Robust signal processing in living cells.

Steuer R, Waldherr S, Sourjik V, Kollmann M.

PLoS Comput Biol. 2011 Nov;7(11):e1002218. doi: 10.1371/journal.pcbi.1002218. Epub 2011 Nov 17.

PMID:
22215991
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A probabilistic approach to identify putative drug targets in biochemical networks.

Murabito E, Smallbone K, Swinton J, Westerhoff HV, Steuer R.

J R Soc Interface. 2011 Jun 6;8(59):880-95. doi: 10.1098/rsif.2010.0540. Epub 2010 Dec 1.

PMID:
21123256
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The metabolic network of Synechocystis sp. PCC 6803: systemic properties of autotrophic growth.

Knoop H, Zilliges Y, Lockau W, Steuer R.

Plant Physiol. 2010 Sep;154(1):410-22. doi: 10.1104/pp.110.157198. Epub 2010 Jul 8.

PMID:
20616194
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation.

Albers SV, Birkeland NK, Driessen AJ, Gertig S, Haferkamp P, Klenk HP, Kouril T, Manica A, Pham TK, Ruoff P, Schleper C, Schomburg D, Sharkey KJ, Siebers B, Sierocinski P, Steuer R, van der Oost J, Westerhoff HV, Wieloch P, Wright PC, Zaparty M.

Biochem Soc Trans. 2009 Feb;37(Pt 1):58-64. doi: 10.1042/BST0370058.

PMID:
19143602
[PubMed - indexed for MEDLINE]
12.

The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks.

Grimbs S, Selbig J, Bulik S, Holzhütter HG, Steuer R.

Mol Syst Biol. 2007;3:146. Epub 2007 Nov 13.

PMID:
18004279
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Computational approaches to the topology, stability and dynamics of metabolic networks.

Steuer R.

Phytochemistry. 2007 Aug-Sep;68(16-18):2139-51. Epub 2007 Jun 14.

PMID:
17574639
[PubMed - indexed for MEDLINE]
14.

From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle.

Steuer R, Nesi AN, Fernie AR, Gross T, Blasius B, Selbig J.

Bioinformatics. 2007 Jun 1;23(11):1378-85. Epub 2007 Mar 7.

PMID:
17344242
[PubMed - indexed for MEDLINE]
Free Article
15.

A gentle guide to the analysis of metabolomic data.

Steuer R, Morgenthal K, Weckwerth W, Selbig J.

Methods Mol Biol. 2007;358:105-26. Review.

PMID:
17035683
[PubMed - indexed for MEDLINE]
16.

Validation and functional annotation of expression-based clusters based on gene ontology.

Steuer R, Humburg P, Selbig J.

BMC Bioinformatics. 2006 Aug 15;7:380.

PMID:
16911788
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Structural kinetic modeling of metabolic networks.

Steuer R, Gross T, Selbig J, Blasius B.

Proc Natl Acad Sci U S A. 2006 Aug 8;103(32):11868-73. Epub 2006 Jul 31.

PMID:
16880395
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Review: on the analysis and interpretation of correlations in metabolomic data.

Steuer R.

Brief Bioinform. 2006 Jun;7(2):151-8. Epub 2006 May 11. Review.

PMID:
16772265
[PubMed - indexed for MEDLINE]
Free Article
19.

Metabolomic networks in plants: Transitions from pattern recognition to biological interpretation.

Morgenthal K, Weckwerth W, Steuer R.

Biosystems. 2006 Feb-Mar;83(2-3):108-17. Epub 2005 Nov 21.

PMID:
16303239
[PubMed - indexed for MEDLINE]
20.

Estimating mutual information using B-spline functions--an improved similarity measure for analysing gene expression data.

Daub CO, Steuer R, Selbig J, Kloska S.

BMC Bioinformatics. 2004 Aug 31;5:118.

PMID:
15339346
[PubMed - indexed for MEDLINE]
Free PMC Article

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