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Results: 1 to 20 of 107

1.

Phylogenomics resolves the timing and pattern of insect evolution.

Misof B, Liu S, Meusemann K, Peters RS, Donath A, Mayer C, Frandsen PB, Ware J, Flouri T, Beutel RG, Niehuis O, Petersen M, Izquierdo-Carrasco F, Wappler T, Rust J, Aberer AJ, Aspöck U, Aspöck H, Bartel D, Blanke A, Berger S, Böhm A, Buckley TR, Calcott B, Chen J, Friedrich F, Fukui M, Fujita M, Greve C, Grobe P, Gu S, Huang Y, Jermiin LS, Kawahara AY, Krogmann L, Kubiak M, Lanfear R, Letsch H, Li Y, Li Z, Li J, Lu H, Machida R, Mashimo Y, Kapli P, McKenna DD, Meng G, Nakagaki Y, Navarrete-Heredia JL, Ott M, Ou Y, Pass G, Podsiadlowski L, Pohl H, von Reumont BM, Schütte K, Sekiya K, Shimizu S, Slipinski A, Stamatakis A, Song W, Su X, Szucsich NU, Tan M, Tan X, Tang M, Tang J, Timelthaler G, Tomizuka S, Trautwein M, Tong X, Uchifune T, Walzl MG, Wiegmann BM, Wilbrandt J, Wipfler B, Wong TK, Wu Q, Wu G, Xie Y, Yang S, Yang Q, Yeates DK, Yoshizawa K, Zhang Q, Zhang R, Zhang W, Zhang Y, Zhao J, Zhou C, Zhou L, Ziesmann T, Zou S, Li Y, Xu X, Zhang Y, Yang H, Wang J, Wang J, Kjer KM, Zhou X.

Science. 2014 Nov 7;346(6210):763-7. doi: 10.1126/science.1257570. Epub 2014 Nov 6.

PMID:
25378627
[PubMed - in process]
2.

The Phylogenetic Likelihood Library.

Flouri T, Izquierdo-Carrasco F, Darriba D, Aberer AJ, Nguyen LT, Minh BQ, von Haeseler A, Stamatakis A.

Syst Biol. 2014 Oct 30. pii: syu084. [Epub ahead of print]

PMID:
25358969
[PubMed - as supplied by publisher]
3.

A novel model of early experiences involving neonatal learning of a T-maze using maternal contact as a reward or its denial as an event of mild emotional adversity.

Stamatakis A, Diamantopoulou A, Panagiotaropoulos T, Raftogianni A, Stylianopoulou F.

Dev Psychobiol. 2014 Dec;56(8):1651-60. doi: 10.1002/dev.21248. Epub 2014 Sep 17.

PMID:
25231083
[PubMed - in process]
4.

ExaBayes: massively parallel bayesian tree inference for the whole-genome era.

Aberer AJ, Kobert K, Stamatakis A.

Mol Biol Evol. 2014 Oct;31(10):2553-6. doi: 10.1093/molbev/msu236. Epub 2014 Aug 18.

PMID:
25135941
[PubMed - in process]
Free PMC Article
5.

Inhibition of projections from the basolateral amygdala to the entorhinal cortex disrupts the acquisition of contextual fear.

Sparta DR, Smithuis J, Stamatakis AM, Jennings JH, Kantak PA, Ung RL, Stuber GD.

Front Behav Neurosci. 2014 May 6;8:129. doi: 10.3389/fnbeh.2014.00129. eCollection 2014.

PMID:
24834031
[PubMed]
Free PMC Article
6.

An optimal algorithm for computing all subtree repeats in trees.

Flouri T, Kobert K, Pissis SP, Stamatakis A.

Philos Trans A Math Phys Eng Sci. 2014 Apr 21;372(2016):20130140. doi: 10.1098/rsta.2013.0140. Print 2014 May 28.

PMID:
24751873
[PubMed]
Free PMC Article
7.

Selecting optimal partitioning schemes for phylogenomic datasets.

Lanfear R, Calcott B, Kainer D, Mayer C, Stamatakis A.

BMC Evol Biol. 2014 Apr 17;14:82. doi: 10.1186/1471-2148-14-82.

PMID:
24742000
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Effects of an early experience of reward through maternal contact or its denial on the dopaminergic system of the rat brain.

Raftogianni A, Stamatakis A, Diamantopoulou A, Kollia AM, Stylianopoulou F.

Neuroscience. 2014 Jun 6;269:11-20. doi: 10.1016/j.neuroscience.2014.03.035. Epub 2014 Mar 27.

PMID:
24680882
[PubMed - in process]
9.

The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data.

Peters RS, Meusemann K, Petersen M, Mayer C, Wilbrandt J, Ziesmann T, Donath A, Kjer KM, Aspöck U, Aspöck H, Aberer A, Stamatakis A, Friedrich F, Hünefeld F, Niehuis O, Beutel RG, Misof B.

BMC Evol Biol. 2014 Mar 20;14(1):52. doi: 10.1186/1471-2148-14-52.

PMID:
24646345
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

libgapmis: extending short-read alignments.

Alachiotis N, Berger S, Flouri T, Pissis SP, Stamatakis A.

BMC Bioinformatics. 2013;14 Suppl 11:S4. doi: 10.1186/1471-2105-14-S11-S4. Epub 2013 Nov 4.

PMID:
24564250
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Novel information theory-based measures for quantifying incongruence among phylogenetic trees.

Salichos L, Stamatakis A, Rokas A.

Mol Biol Evol. 2014 May;31(5):1261-71. doi: 10.1093/molbev/msu061. Epub 2014 Feb 7.

PMID:
24509691
[PubMed - indexed for MEDLINE]
12.

PUmPER: phylogenies updated perpetually.

Izquierdo-Carrasco F, Cazes J, Smith SA, Stamatakis A.

Bioinformatics. 2014 May 15;30(10):1476-7. doi: 10.1093/bioinformatics/btu053. Epub 2014 Jan 28.

PMID:
24478338
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context.

Dunthorn M, Otto J, Berger SA, Stamatakis A, Mahé F, Romac S, de Vargas C, Audic S; Biomarks Consortium, Stock A, Kauff F, Stoeck T.

Mol Biol Evol. 2014 Apr;31(4):993-1009. doi: 10.1093/molbev/msu055. Epub 2014 Jan 27.

PMID:
24473288
[PubMed - indexed for MEDLINE]
14.

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Stamatakis A.

Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.

PMID:
24451623
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Optimization strategies for fast detection of positive selection on phylogenetic trees.

Valle M, Schabauer H, Pacher C, Stockinger H, Stamatakis A, Robinson-Rechavi M, Salamin N.

Bioinformatics. 2014 Jan 23. [Epub ahead of print]

PMID:
24389654
[PubMed - as supplied by publisher]
Free PMC Article
16.

Effects of an Early Experience Involving Training in a T-Maze Under either Denial or Receipt of Expected Reward through Maternal Contact.

Stamatakis A, Diamantopoulou A, Panagiotaropoulos T, Raftogianni A, Stylianopoulou F.

Front Endocrinol (Lausanne). 2013 Nov 15;4:178. doi: 10.3389/fendo.2013.00178. Review.

PMID:
24298269
[PubMed]
Free PMC Article
17.

A unique population of ventral tegmental area neurons inhibits the lateral habenula to promote reward.

Stamatakis AM, Jennings JH, Ung RL, Blair GA, Weinberg RJ, Neve RL, Boyce F, Mattis J, Ramakrishnan C, Deisseroth K, Stuber GD.

Neuron. 2013 Nov 20;80(4):1039-53. doi: 10.1016/j.neuron.2013.08.023.

PMID:
24267654
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

BrassiBase: introduction to a novel knowledge database on Brassicaceae evolution.

Kiefer M, Schmickl R, German DA, Mandáková T, Lysak MA, Al-Shehbaz IA, Franzke A, Mummenhoff K, Stamatakis A, Koch MA.

Plant Cell Physiol. 2014 Jan;55(1):e3. doi: 10.1093/pcp/pct158. Epub 2013 Nov 19.

PMID:
24259684
[PubMed - indexed for MEDLINE]
19.

Sexually dimorphic long-term effects of an early life experience on AMPA receptor subunit expression in rat brain.

Katsouli S, Stamatakis A, Giompres P, Kouvelas ED, Stylianopoulou F, Mitsacos A.

Neuroscience. 2014 Jan 17;257:49-64. doi: 10.1016/j.neuroscience.2013.10.073. Epub 2013 Nov 8.

PMID:
24211798
[PubMed - indexed for MEDLINE]
20.

PEAR: a fast and accurate Illumina Paired-End reAd mergeR.

Zhang J, Kobert K, Flouri T, Stamatakis A.

Bioinformatics. 2014 Mar 1;30(5):614-20. doi: 10.1093/bioinformatics/btt593. Epub 2013 Oct 18.

PMID:
24142950
[PubMed - indexed for MEDLINE]
Free PMC Article

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