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Results: 13

1.

Proteome analysis of pod and seed development in the model legume Lotus japonicus.

Nautrup-Pedersen G, Dam S, Laursen BS, Siegumfeldt AL, Nielsen K, Goffard N, Stærfeldt HH, Friis C, Sato S, Tabata S, Lorentzen A, Roepstorff P, Stougaard J.

J Proteome Res. 2010 Nov 5;9(11):5715-26. doi: 10.1021/pr100511u. Epub 2010 Sep 29.

PMID:
20831161
[PubMed - indexed for MEDLINE]
2.

The proteome of seed development in the model legume Lotus japonicus.

Dam S, Laursen BS, Ornfelt JH, Jochimsen B, Staerfeldt HH, Friis C, Nielsen K, Goffard N, Besenbacher S, Krusell L, Sato S, Tabata S, Thøgersen IB, Enghild JJ, Stougaard J.

Plant Physiol. 2009 Mar;149(3):1325-40. doi: 10.1104/pp.108.133405. Epub 2009 Jan 7.

PMID:
19129418
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes.

Hallin PF, Stærfeldt HH, Rotenberg E, Binnewies TT, Benham CJ, Ussery DW.

Stand Genomic Sci. 2009 Sep 25;1(2):204-15. doi: 10.4056/sigs.28177.

PMID:
21304658
[PubMed]
Free PMC Article
4.

RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW.

Nucleic Acids Res. 2007;35(9):3100-8. Epub 2007 Apr 22.

PMID:
17452365
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

FeatureMap3D--a tool to map protein features and sequence conservation onto homologous structures in the PDB.

Wernersson R, Rapacki K, Staerfeldt HH, Sackett PW, Mølgaard A.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W84-8.

PMID:
16845115
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Origin of replication in circular prokaryotic chromosomes.

Worning P, Jensen LJ, Hallin PF, Staerfeldt HH, Ussery DW.

Environ Microbiol. 2006 Feb;8(2):353-61.

PMID:
16423021
[PubMed - indexed for MEDLINE]
7.

Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing.

Wernersson R, Schierup MH, Jørgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshøj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L.

BMC Genomics. 2005 May 10;6:70.

PMID:
15885146
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome Update: proteome comparisons.

Binnewies TT, Hallin PF, Staerfeldt HH, Ussery DW.

Microbiology. 2005 Jan;151(Pt 1):1-4. No abstract available.

PMID:
15632419
[PubMed - indexed for MEDLINE]
Free Article
9.

Prediction of human protein function according to Gene Ontology categories.

Jensen LJ, Gupta R, Staerfeldt HH, Brunak S.

Bioinformatics. 2003 Mar 22;19(5):635-42.

PMID:
12651722
[PubMed - indexed for MEDLINE]
Free Article
10.

Bias of purine stretches in sequenced chromosomes.

Ussery D, Soumpasis DM, Brunak S, Staerfeldt HH, Worning P, Krogh A.

Comput Chem. 2002 Jul;26(5):531-41.

PMID:
12144181
[PubMed - indexed for MEDLINE]
11.

Prediction of human protein function from post-translational modifications and localization features.

Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Staerfeldt HH, Rapacki K, Workman C, Andersen CA, Knudsen S, Krogh A, Valencia A, Brunak S.

J Mol Biol. 2002 Jun 21;319(5):1257-65.

PMID:
12079362
[PubMed - indexed for MEDLINE]
12.

A DNA structural atlas for Escherichia coli.

Pedersen AG, Jensen LJ, Brunak S, Staerfeldt HH, Ussery DW.

J Mol Biol. 2000 Jun 16;299(4):907-30.

PMID:
10843847
[PubMed - indexed for MEDLINE]
13.

MatrixPlot: visualizing sequence constraints.

Gorodkin J, Staerfeldt HH, Lund O, Brunak S.

Bioinformatics. 1999 Sep;15(9):769-70.

PMID:
10498780
[PubMed - indexed for MEDLINE]
Free Article

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