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Results: 18

1.

Flow cytometry bioinformatics.

O'Neill K, Aghaeepour N, Spidlen J, Brinkman R.

PLoS Comput Biol. 2013;9(12):e1003365. doi: 10.1371/journal.pcbi.1003365. Epub 2013 Dec 5.

PMID:
24363631
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

GenePattern flow cytometry suite.

Spidlen J, Barsky A, Breuer K, Carr P, Nazaire MD, Hill BA, Qian Y, Liefeld T, Reich M, Mesirov JP, Wilkinson P, Scheuermann RH, Sekaly RP, Brinkman RR.

Source Code Biol Med. 2013 Jul 3;8(1):14. doi: 10.1186/1751-0473-8-14.

PMID:
23822732
[PubMed]
Free PMC Article
3.

ICEFormat-the image cytometry experiment format.

Spidlen J, Novo D.

Cytometry A. 2012 Dec;81(12):1015-8. doi: 10.1002/cyto.a.22212. Epub 2012 Oct 8. No abstract available.

PMID:
23044646
[PubMed - indexed for MEDLINE]
Free Article
4.

FlowRepository: a resource of annotated flow cytometry datasets associated with peer-reviewed publications.

Spidlen J, Breuer K, Rosenberg C, Kotecha N, Brinkman RR.

Cytometry A. 2012 Sep;81(9):727-31. doi: 10.1002/cyto.a.22106. Epub 2012 Aug 6. No abstract available.

PMID:
22887982
[PubMed - indexed for MEDLINE]
Free Article
5.

Preparing a Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) compliant manuscript using the International Society for Advancement of Cytometry (ISAC) FCS file repository (FlowRepository.org).

Spidlen J, Breuer K, Brinkman R.

Curr Protoc Cytom. 2012 Jul;Chapter 10:Unit 10.18. doi: 10.1002/0471142956.cy1018s61.

PMID:
22752950
[PubMed - indexed for MEDLINE]
6.

FCS 3.1 Implementation guidance.

Bray C, Spidlen J, Brinkman RR.

Cytometry A. 2012 Jun;81(6):523-6. doi: 10.1002/cyto.a.22018. Epub 2012 Jan 25.

PMID:
22278913
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Flow cytometry data standards.

Spidlen J, Shooshtari P, Kollmann TR, Brinkman RR.

BMC Res Notes. 2011 Mar 7;4:50. doi: 10.1186/1756-0500-4-50.

PMID:
21385382
[PubMed]
Free PMC Article
8.

Data File Standard for Flow Cytometry, version FCS 3.1.

Spidlen J, Moore W, Parks D, Goldberg M, Bray C, Bierre P, Gorombey P, Hyun B, Hubbard M, Lange S, Lefebvre R, Leif R, Novo D, Ostruszka L, Treister A, Wood J, Murphy RF, Roederer M, Sudar D, Zigon R, Brinkman RR.

Cytometry A. 2010 Jan;77(1):97-100. doi: 10.1002/cyto.a.20825.

PMID:
19937951
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

FuGEFlow: data model and markup language for flow cytometry.

Qian Y, Tchuvatkina O, Spidlen J, Wilkinson P, Gasparetto M, Jones AR, Manion FJ, Scheuermann RH, Sekaly RP, Brinkman RR.

BMC Bioinformatics. 2009 Jun 16;10:184. doi: 10.1186/1471-2105-10-184.

PMID:
19531228
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

flowCore: a Bioconductor package for high throughput flow cytometry.

Hahne F, LeMeur N, Brinkman RR, Ellis B, Haaland P, Sarkar D, Spidlen J, Strain E, Gentleman R.

BMC Bioinformatics. 2009 Apr 9;10:106. doi: 10.1186/1471-2105-10-106.

PMID:
19358741
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Gating-ML: XML-based gating descriptions in flow cytometry.

Spidlen J, Leif RC, Moore W, Roederer M; International Society for the Advancement of Cytometry Data Standards Task Force, Brinkman RR.

Cytometry A. 2008 Dec;73A(12):1151-7. doi: 10.1002/cyto.a.20637.

PMID:
18773465
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

MIFlowCyt: the minimum information about a Flow Cytometry Experiment.

Lee JA, Spidlen J, Boyce K, Cai J, Crosbie N, Dalphin M, Furlong J, Gasparetto M, Goldberg M, Goralczyk EM, Hyun B, Jansen K, Kollmann T, Kong M, Leif R, McWeeney S, Moloshok TD, Moore W, Nolan G, Nolan J, Nikolich-Zugich J, Parrish D, Purcell B, Qian Y, Selvaraj B, Smith C, Tchuvatkina O, Wertheimer A, Wilkinson P, Wilson C, Wood J, Zigon R; International Society for Advancement of Cytometry Data Standards Task Force, Scheuermann RH, Brinkman RR.

Cytometry A. 2008 Oct;73(10):926-30. doi: 10.1002/cyto.a.20623.

PMID:
18752282
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Data standards for flow cytometry.

Spidlen J, Gentleman RC, Haaland PD, Langille M, Le Meur N, Ochs MF, Schmitt C, Smith CA, Treister AS, Brinkman RR.

OMICS. 2006 Summer;10(2):209-14. Review.

PMID:
16901228
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Flexible information storage in MUDR(II) EHR.

Spidlen J, Hanzlícek P, Ríha A, Zvárová J.

Int J Med Inform. 2006 Mar-Apr;75(3-4):201-8. Epub 2005 Oct 25.

PMID:
16253546
[PubMed - indexed for MEDLINE]
15.

Obstacles to Implementing an Execution Engine for Clinical Guidelines Formalized in GLIF.

Kolesa P, Spidlen J, Zvárová J.

Stud Health Technol Inform. 2005;116:563-8.

PMID:
16160317
[PubMed - in process]
16.

MUDRLite - health record tailored to your particular needs.

Spidlen J, Hanzlicek P, Zvarova J.

Stud Health Technol Inform. 2004;105:202-9.

PMID:
15718609
[PubMed - indexed for MEDLINE]
17.

Universal electronic health record MUDR.

Hanzlicek P, Spidlen J, Nagy M.

Stud Health Technol Inform. 2004;105:190-201.

PMID:
15718608
[PubMed - indexed for MEDLINE]
18.

User interface of MUDR electronic health record.

Hanzlicek P, Spidlen J, Heroutova H, Nagy M.

Int J Med Inform. 2005 Mar;74(2-4):221-7.

PMID:
15694628
[PubMed - indexed for MEDLINE]

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