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Items: 1 to 20 of 164

1.

An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry.

Dhanyalakshmi KH, Naika MB, Sajeevan RS, Mathew OK, Shafi KM, Sowdhamini R, N Nataraja K.

PLoS One. 2016 Mar 16;11(3):e0151323. doi: 10.1371/journal.pone.0151323. eCollection 2016.

2.

Protein sequence design and its applications.

Sandhya S, Mudgal R, Kumar G, Sowdhamini R, Srinivasan N.

Curr Opin Struct Biol. 2016 Apr;37:71-80. doi: 10.1016/j.sbi.2015.12.004. Epub 2016 Jan 8. Review.

PMID:
26773478
3.

Sequence Analysis and Evolutionary Studies of Reelin Proteins.

Manoharan M, Muhammad SA, Sowdhamini R.

Bioinform Biol Insights. 2015 Dec 20;9:187-93. doi: 10.4137/BBI.S26530. eCollection 2015.

4.

Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses.

Barah P, B N MN, Jayavelu ND, Sowdhamini R, Shameer K, Bones AM.

Nucleic Acids Res. 2016 Apr 20;44(7):3147-64. doi: 10.1093/nar/gkv1463. Epub 2015 Dec 17.

5.

Genome-wide survey of putative RNA-binding proteins encoded in the human proteome.

Ghosh P, Sowdhamini R.

Mol Biosyst. 2016 Jan 26;12(2):532-40. doi: 10.1039/c5mb00638d.

PMID:
26675803
6.

PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features.

Gandhimathi A, Ghosh P, Hariharaputran S, Mathew OK, Sowdhamini R.

Nucleic Acids Res. 2016 Jan 4;44(D1):D410-4. doi: 10.1093/nar/gkv1205. Epub 2015 Nov 8.

7.

Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.

Shameer K, Tripathi LP, Kalari KR, Dudley JT, Sowdhamini R.

Brief Bioinform. 2015 Oct 22. pii: bbv084. [Epub ahead of print]

PMID:
26494363
8.

Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.

Kaushik S, Nair AG, Mutt E, Subramanian HP, Sowdhamini R.

Bioinformatics. 2016 Feb 1;32(3):338-44. doi: 10.1093/bioinformatics/btv538. Epub 2015 Oct 10.

PMID:
26454276
9.

PPCheck: A Webserver for the Quantitative Analysis of Protein-Protein Interfaces and Prediction of Residue Hotspots.

Sukhwal A, Sowdhamini R.

Bioinform Biol Insights. 2015 Sep 21;9:141-51. doi: 10.4137/BBI.S25928. eCollection 2015.

10.

A tale of two paralogs: human Transformer2 proteins with differential RNA-binding affinities.

Ghosh P, Grellscheid SN, Sowdhamini R.

J Biomol Struct Dyn. 2015 Nov 26:1-8. [Epub ahead of print]

PMID:
26414300
11.

Molecular modelling of human 5-hydroxytryptamine receptor (5-HT2A) and virtual screening studies towards the identification of agonist and antagonist molecules.

Gandhimathi A, Sowdhamini R.

J Biomol Struct Dyn. 2016 May;34(5):952-70. doi: 10.1080/07391102.2015.1062802. Epub 2015 Sep 1.

PMID:
26327576
12.

Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.

Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N, Lingu CS, Mahita J, Malarini R, Malhotra S, Malini M, Mathew OK, Mutt E, Naika M, Nitish S, Pasha SN, Raghavender US, Rajamani A, Shilpa S, Shingate PN, Singh HR, Sukhwal A, Sunitha MS, Sumathi M, Ramaswamy S, Gowda M, Sowdhamini R.

BMC Plant Biol. 2015 Aug 28;15:212. doi: 10.1186/s12870-015-0562-x.

13.

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.

Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJ, Craik DJ, Finn RD, Gloriam D, Haft DH, Henrissat B, Holliday GL, Isberg V, Kaas Q, Landsman D, Lenfant N, Manning G, Nagano N, Srinivasan N, O'Donovan C, Pruitt KD, Sowdhamini R, Rawlings ND, Saier MH Jr, Sharman JL, Spedding M, Tsirigos KD, Vastermark A, Vriend G.

Database (Oxford). 2015 Jul 11;2015:bav063. doi: 10.1093/database/bav063. eCollection 2015.

14.

An in silico approach towards the identification of novel inhibitors of the TLR-4 signaling pathway.

Mahita J, Harini K, Rao Pichika M, Sowdhamini R.

J Biomol Struct Dyn. 2015 Sep 2:1-18. [Epub ahead of print]

PMID:
26264972
15.

Computational Approaches for Decoding Select Odorant-Olfactory Receptor Interactions Using Mini-Virtual Screening.

Harini K, Sowdhamini R.

PLoS One. 2015 Jul 29;10(7):e0131077. doi: 10.1371/journal.pone.0131077. eCollection 2015.

16.

SInCRe-structural interactome computational resource for Mycobacterium tuberculosis.

Metri R, Hariharaputran S, Ramakrishnan G, Anand P, Raghavender US, Ochoa-MontaƱo B, Higueruelo AP, Sowdhamini R, Chandra NR, Blundell TL, Srinivasan N.

Database (Oxford). 2015 Jun 30;2015:bav060. doi: 10.1093/database/bav060. Print 2015.

17.

172 Computational analysis and prediction of proteins that undergo domain swapping.

Shingate P, Upadhyay A, Khader S, Sowdhamini R.

J Biomol Struct Dyn. 2015;33 Suppl 1:112-3. doi: 10.1080/07391102.2015.1032809. No abstract available.

PMID:
26103381
18.

161 Bridging the islands of protein families in sequence space using artificial sequences.

Srinivasan N, Mudgal R, Kumar G, Chandra NR, Sowdhamini R, Sandhya S.

J Biomol Struct Dyn. 2015;33 Suppl 1:103-4. doi: 10.1080/07391102.2015.1032798. No abstract available.

PMID:
26103370
19.

Energetic Calculations to Decipher pH-Dependent Oligomerization and Domain Swapping of Proteins.

Shingate P, Warwicker J, Sowdhamini R.

PLoS One. 2015 Jun 4;10(6):e0127716. doi: 10.1371/journal.pone.0127716. eCollection 2015.

20.

Mechanistic Basis Of Peptide-Protein Interaction In AtPep1-PEPR1 Complex In Arabidopsis thaliana.

Raghavender US, Sowdhamini R.

Protein Pept Lett. 2015;22(7):618-27.

PMID:
25961822
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