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Results: 1 to 20 of 48


Identification of best indicators of peptide-spectrum match using a permutation resampling approach.

Akhtar MN, Southey BR, Andrén PE, Sweedler JV, Rodriguez-Zas SL.

J Bioinform Comput Biol. 2014 Oct;12(5):1440001. doi: 10.1142/S0219720014400010.


Comparative brain transcriptomic analyses of scouting across distinct behavioural and ecological contexts in honeybees.

Liang ZS, Mattila HR, Rodriguez-Zas SL, Southey BR, Seeley TD, Robinson GE.

Proc Biol Sci. 2014 Dec 22;281(1797). pii: 20141868. doi: 10.1098/rspb.2014.1868.


Accurate assignment of significance to neuropeptide identifications using Monte Carlo k-permuted decoy databases.

Akhtar MN, Southey BR, Andrén PE, Sweedler JV, Rodriguez-Zas SL.

PLoS One. 2014 Oct 17;9(10):e111112. doi: 10.1371/journal.pone.0111112. eCollection 2014.


Advancing the understanding of behaviors associated with Bacille Calmette Guérin infection using multivariate analysis.

Rodriguez-Zas SL, Nixon SE, Lawson MA, Mccusker RH, Southey BR, O'Connor JC, Dantzer R, Kelley KW.

Brain Behav Immun. 2015 Feb;44:176-86. doi: 10.1016/j.bbi.2014.09.018. Epub 2014 Oct 7.


Comparing label-free quantitative peptidomics approaches to characterize diurnal variation of peptides in the rat suprachiasmatic nucleus.

Southey BR, Lee JE, Zamdborg L, Atkins N Jr, Mitchell JW, Li M, Gillette MU, Kelleher NL, Sweedler JV.

Anal Chem. 2014 Jan 7;86(1):443-52. doi: 10.1021/ac4023378. Epub 2013 Dec 16.


Bivariate genome-wide association analysis of the growth and intake components of feed efficiency.

Serão NV, González-Peña D, Beever JE, Bollero GA, Southey BR, Faulkner DB, Rodriguez-Zas SL.

PLoS One. 2013 Oct 29;8(10):e78530. doi: 10.1371/journal.pone.0078530. eCollection 2013.


Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle.

Serão NV, González-Peña D, Beever JE, Faulkner DB, Southey BR, Rodriguez-Zas SL.

BMC Genet. 2013 Sep 25;14:94. doi: 10.1186/1471-2156-14-94.


Multifactorial Understanding of Ion Abundance in Tandem Mass Spectrometry Experiments.

Fazal Z, Southey BR, Sweedler JV, Rodriguez-Zas SL.

J Proteomics Bioinform. 2013 Jan 29;6(2):23-29.


Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus.

Lee JE, Zamdborg L, Southey BR, Atkins N Jr, Mitchell JW, Li M, Gillette MU, Kelleher NL, Sweedler JV.

J Proteome Res. 2013 Feb 1;12(2):585-93. doi: 10.1021/pr300605p. Epub 2013 Jan 11.


Identification and characterization of alternative exon usage linked glioblastoma multiforme survival.

Sadeque A, Serão NV, Southey BR, Delfino KR, Rodriguez-Zas SL.

BMC Med Genomics. 2012 Dec 4;5:59. doi: 10.1186/1755-8794-5-59.


First survey and functional annotation of prohormone and convertase genes in the pig.

Porter KI, Southey BR, Sweedler JV, Rodriguez-Zas SL.

BMC Genomics. 2012 Nov 15;13:582. doi: 10.1186/1471-2164-13-582.


Analyses of pig genomes provide insight into porcine demography and evolution.

Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, Li S, Larkin DM, Kim H, Frantz LA, Caccamo M, Ahn H, Aken BL, Anselmo A, Anthon C, Auvil L, Badaoui B, Beattie CW, Bendixen C, Berman D, Blecha F, Blomberg J, Bolund L, Bosse M, Botti S, Bujie Z, Bystrom M, Capitanu B, Carvalho-Silva D, Chardon P, Chen C, Cheng R, Choi SH, Chow W, Clark RC, Clee C, Crooijmans RP, Dawson HD, Dehais P, De Sapio F, Dibbits B, Drou N, Du ZQ, Eversole K, Fadista J, Fairley S, Faraut T, Faulkner GJ, Fowler KE, Fredholm M, Fritz E, Gilbert JG, Giuffra E, Gorodkin J, Griffin DK, Harrow JL, Hayward A, Howe K, Hu ZL, Humphray SJ, Hunt T, Hornshøj H, Jeon JT, Jern P, Jones M, Jurka J, Kanamori H, Kapetanovic R, Kim J, Kim JH, Kim KW, Kim TH, Larson G, Lee K, Lee KT, Leggett R, Lewin HA, Li Y, Liu W, Loveland JE, Lu Y, Lunney JK, Ma J, Madsen O, Mann K, Matthews L, McLaren S, Morozumi T, Murtaugh MP, Narayan J, Nguyen DT, Ni P, Oh SJ, Onteru S, Panitz F, Park EW, Park HS, Pascal G, Paudel Y, Perez-Enciso M, Ramirez-Gonzalez R, Reecy JM, Rodriguez-Zas S, Rohrer GA, Rund L, Sang Y, Schachtschneider K, Schraiber JG, Schwartz J, Scobie L, Scott C, Searle S, Servin B, Southey BR, Sperber G, Stadler P, Sweedler JV, Tafer H, Thomsen B, Wali R, Wang J, Wang J, White S, Xu X, Yerle M, Zhang G, Zhang J, Zhang J, Zhao S, Rogers J, Churcher C, Schook LB.

Nature. 2012 Nov 15;491(7424):393-8. doi: 10.1038/nature11622.


Evaluation of database search programs for accurate detection of neuropeptides in tandem mass spectrometry experiments.

Akhtar MN, Southey BR, Andrén PE, Sweedler JV, Rodriguez-Zas SL.

J Proteome Res. 2012 Dec 7;11(12):6044-55. doi: 10.1021/pr3007123. Epub 2012 Nov 6.


Microarray analysis of natural socially regulated plasticity in circadian rhythms of honey bees.

Rodriguez-Zas SL, Southey BR, Shemesh Y, Rubin EB, Cohen M, Robinson GE, Bloch G.

J Biol Rhythms. 2012 Feb;27(1):12-24. doi: 10.1177/0748730411431404.


Probing the production of amidated peptides following genetic and dietary copper manipulations.

Yin P, Bousquet-Moore D, Annangudi SP, Southey BR, Mains RE, Eipper BA, Sweedler JV.

PLoS One. 2011;6(12):e28679. doi: 10.1371/journal.pone.0028679. Epub 2011 Dec 16.


Voluntary wheel running reverses age-induced changes in hippocampal gene expression.

Kohman RA, Rodriguez-Zas SL, Southey BR, Kelley KW, Dantzer R, Rhodes JS.

PLoS One. 2011;6(8):e22654. doi: 10.1371/journal.pone.0022654. Epub 2011 Aug 8.


Therapy-, gender- and race-specific microRNA markers, target genes and networks related to glioblastoma recurrence and survival.

Delfino KR, Serão NV, Southey BR, Rodriguez-Zas SL.

Cancer Genomics Proteomics. 2011 Jul-Aug;8(4):173-83.


Cell cycle and aging, morphogenesis, and response to stimuli genes are individualized biomarkers of glioblastoma progression and survival.

Serão NV, Delfino KR, Southey BR, Beever JE, Rodriguez-Zas SL.

BMC Med Genomics. 2011 Jun 7;4:49. doi: 10.1186/1755-8794-4-49.


Neurogenomic signatures of spatiotemporal memories in time-trained forager honey bees.

Naeger NL, Van Nest BN, Johnson JN, Boyd SD, Southey BR, Rodriguez-Zas SL, Moore D, Robinson GE.

J Exp Biol. 2011 Mar 15;214(Pt 6):979-87. doi: 10.1242/jeb.053421.


Transferase activity function and system development process are critical in cattle embryo development.

Adams HA, Southey BR, Everts RE, Marjani SL, Tian CX, Lewin HA, Rodriguez-Zas SL.

Funct Integr Genomics. 2011 Mar;11(1):139-50. doi: 10.1007/s10142-010-0189-9. Epub 2010 Sep 16.

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