Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 105

1.

Curation, integration and visualization of bacterial virulence factors in PATRIC.

Mao C, Abraham D, Wattam AR, Wilson MJ, Shukla M, Yoo HS, Sobral BW.

Bioinformatics. 2014 Sep 30. pii: btu631. [Epub ahead of print]

PMID:
25273106
[PubMed - as supplied by publisher]
Free Article
2.

Comparative genomic analysis at the PATRIC, a bioinformatic resource center.

Wattam AR, Gabbard JL, Shukla M, Sobral BW.

Methods Mol Biol. 2014;1197:287-308. doi: 10.1007/978-1-4939-1261-2_17.

PMID:
25172288
[PubMed - in process]
3.

Comparative nutritional and chemical phenome of Clostridium difficile isolates determined using phenotype microarrays.

Scaria J, Chen JW, Useh N, He H, McDonough SP, Mao C, Sobral B, Chang YF.

Int J Infect Dis. 2014 Oct;27:20-5. doi: 10.1016/j.ijid.2014.06.018. Epub 2014 Aug 12.

PMID:
25130165
[PubMed - in process]
Free Article
4.

Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH.

PLoS One. 2014 Jun 17;9(6):e99979. doi: 10.1371/journal.pone.0099979. eCollection 2014.

PMID:
24936976
[PubMed - in process]
Free PMC Article
5.

Consensus statement understanding health and malnutrition through a systems approach: the ENOUGH program for early life.

Kaput J, van Ommen B, Kremer B, Priami C, Monteiro JP, Morine M, Pepping F, Diaz Z, Fenech M, He Y, Albers R, Drevon CA, Evelo CT, Hancock RE, Ijsselmuiden C, Lumey LH, Minihane AM, Muller M, Murgia C, Radonjic M, Sobral B, West KP Jr.

Genes Nutr. 2014 Jan;9(1):378. doi: 10.1007/s12263-013-0378-y. Epub 2013 Dec 22.

PMID:
24363221
[PubMed]
Free PMC Article
6.

Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence.

Wattam AR, Foster JT, Mane SP, Beckstrom-Sternberg SM, Beckstrom-Sternberg JM, Dickerman AW, Keim P, Pearson T, Shukla M, Ward DV, Williams KP, Sobral BW, Tsolis RM, Whatmore AM, O'Callaghan D.

J Bacteriol. 2014 Mar;196(5):920-30. doi: 10.1128/JB.01091-13. Epub 2013 Dec 13.

PMID:
24336939
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Differential stress transcriptome landscape of historic and recently emerged hypervirulent strains of Clostridium difficile strains determined using RNA-seq.

Scaria J, Mao C, Chen JW, McDonough SP, Sobral B, Chang YF.

PLoS One. 2013 Nov 7;8(11):e78489. doi: 10.1371/journal.pone.0078489. eCollection 2013.

PMID:
24244315
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

PATRIC, the bacterial bioinformatics database and analysis resource.

Wattam AR, Abraham D, Dalay O, Disz TL, Driscoll T, Gabbard JL, Gillespie JJ, Gough R, Hix D, Kenyon R, Machi D, Mao C, Nordberg EK, Olson R, Overbeek R, Pusch GD, Shukla M, Schulman J, Stevens RL, Sullivan DE, Vonstein V, Warren A, Will R, Wilson MJ, Yoo HS, Zhang C, Zhang Y, Sobral BW.

Nucleic Acids Res. 2014 Jan;42(Database issue):D581-91. doi: 10.1093/nar/gkt1099. Epub 2013 Nov 12.

PMID:
24225323
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The condition-dependent transcriptional landscape of Burkholderia pseudomallei.

Ooi WF, Ong C, Nandi T, Kreisberg JF, Chua HH, Sun G, Chen Y, Mueller C, Conejero L, Eshaghi M, Ang RM, Liu J, Sobral BW, Korbsrisate S, Gan YH, Titball RW, Bancroft GJ, Valade E, Tan P.

PLoS Genet. 2013;9(9):e1003795. doi: 10.1371/journal.pgen.1003795. Epub 2013 Sep 12.

PMID:
24068961
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Bacterial DNA sifted from the Trichoplax adhaerens (Animalia: Placozoa) genome project reveals a putative rickettsial endosymbiont.

Driscoll T, Gillespie JJ, Nordberg EK, Azad AF, Sobral BW.

Genome Biol Evol. 2013;5(4):621-45. doi: 10.1093/gbe/evt036.

PMID:
23475938
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

TBCAP; tuberculosis annotation project.

Brennan PJ, Brosch R, Birren B, Sobral B.

Tuberculosis (Edinb). 2013 Jan;93(1):1-5. doi: 10.1016/j.tube.2012.11.013. Epub 2013 Jan 16. No abstract available.

PMID:
23332402
[PubMed - indexed for MEDLINE]
12.

Database resources for the tuberculosis community.

Lew JM, Mao C, Shukla M, Warren A, Will R, Kuznetsov D, Xenarios I, Robertson BD, Gordon SV, Schnappinger D, Cole ST, Sobral B.

Tuberculosis (Edinb). 2013 Jan;93(1):12-7. doi: 10.1016/j.tube.2012.11.003. Epub 2013 Jan 17. Review.

PMID:
23332401
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Proteomic comparison of historic and recently emerged hypervirulent Clostridium difficile strains.

Chen JW, Scaria J, Mao C, Sobral B, Zhang S, Lawley T, Chang YF.

J Proteome Res. 2013 Mar 1;12(3):1151-61. doi: 10.1021/pr3007528. Epub 2013 Jan 25.

PMID:
23298230
[PubMed - indexed for MEDLINE]
14.

Functional assignment of Mycobacterium tuberculosis proteome revealed by genome-scale fold-recognition.

Mao C, Shukla M, Larrouy-Maumus G, Dix FL, Kelley LA, Sternberg MJ, Sobral BW, de Carvalho LP.

Tuberculosis (Edinb). 2013 Jan;93(1):40-6. doi: 10.1016/j.tube.2012.11.008. Epub 2013 Jan 1. Review.

PMID:
23287603
[PubMed - indexed for MEDLINE]
15.

Helicobacter pylori colonization ameliorates glucose homeostasis in mice through a PPAR γ-dependent mechanism.

Bassaganya-Riera J, Dominguez-Bello MG, Kronsteiner B, Carbo A, Lu P, Viladomiu M, Pedragosa M, Zhang X, Sobral BW, Mane SP, Mohapatra SK, Horne WT, Guri AJ, Groeschl M, Lopez-Velasco G, Hontecillas R.

PLoS One. 2012;7(11):e50069. doi: 10.1371/journal.pone.0050069. Epub 2012 Nov 15.

PMID:
23166823
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Comparative genomics of early-diverging Brucella strains reveals a novel lipopolysaccharide biosynthesis pathway.

Wattam AR, Inzana TJ, Williams KP, Mane SP, Shukla M, Almeida NF, Dickerman AW, Mason S, Moriyón I, O'Callaghan D, Whatmore AM, Sobral BW, Tiller RV, Hoffmaster AR, Frace MA, De Castro C, Molinaro A, Boyle SM, De BK, Setubal JC.

MBio. 2012 Nov 6;3(5):e00246-11. doi: 10.1128/mBio.00388-12.

PMID:
23131829
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Comparative genomics of early-diverging Brucella strains reveals a novel lipopolysaccharide biosynthesis pathway.

Wattam AR, Inzana TJ, Williams KP, Mane SP, Shukla M, Almeida NF, Dickerman AW, Mason S, Moriyón I, O'Callaghan D, Whatmore AM, Sobral BW, Tiller RV, Hoffmaster AR, Frace MA, De Castro C, Molinaro A, Boyle SM, De BK, Setubal JC.

MBio. 2012 Aug 28;3(5):e00246-12. doi: 10.1128/mBio.00246-12. Print 2012. Erratum in: MBio. 2012 Nov-Dec;3(6):e00388-12.

PMID:
22930339
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011.

Pyysalo S, Ohta T, Rak R, Sullivan D, Mao C, Wang C, Sobral B, Tsujii J, Ananiadou S.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S2. doi: 10.1186/1471-2105-13-S11-S2.

PMID:
22759456
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A Rickettsia genome overrun by mobile genetic elements provides insight into the acquisition of genes characteristic of an obligate intracellular lifestyle.

Gillespie JJ, Joardar V, Williams KP, Driscoll T, Hostetler JB, Nordberg E, Shukla M, Walenz B, Hill CA, Nene VM, Azad AF, Sobral BW, Caler E.

J Bacteriol. 2012 Jan;194(2):376-94. doi: 10.1128/JB.06244-11. Epub 2011 Nov 4.

PMID:
22056929
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Selection of a phylogenetically informative region of the norovirus genome for outbreak linkage.

Verhoef L, Williams KP, Kroneman A, Sobral B, van Pelt W, Koopmans M; FBVE network.

Virus Genes. 2012 Feb;44(1):8-18. doi: 10.1007/s11262-011-0673-x. Epub 2011 Sep 30.

PMID:
21960432
[PubMed - indexed for MEDLINE]
Free PMC Article
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk