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Results: 1 to 20 of 33

1.

Genomic era diagnosis and management of hereditary and sporadic colon cancer.

Esplin ED, Snyder MP.

World J Clin Oncol. 2014 Dec 10;5(5):1036-47. doi: 10.5306/wjco.v5.i5.1036. Review.

PMID:
25493239
[PubMed]
Free PMC Article
2.

Comparison of the transcriptional landscapes between human and mouse tissues.

Lin S, Lin Y, Nery JR, Urich MA, Breschi A, Davis CA, Dobin A, Zaleski C, Beer MA, Chapman WC, Gingeras TR, Ecker JR, Snyder MP.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17224-9. doi: 10.1073/pnas.1413624111. Epub 2014 Nov 20.

PMID:
25413365
[PubMed - in process]
Free PMC Article
3.

Principles of regulatory information conservation between mouse and human.

Cheng Y, Ma Z, Kim BH, Wu W, Cayting P, Boyle AP, Sundaram V, Xing X, Dogan N, Li J, Euskirchen G, Lin S, Lin Y, Visel A, Kawli T, Yang X, Patacsil D, Keller CA, Giardine B; Mouse ENCODE Consortium, Kundaje A, Wang T, Pennacchio LA, Weng Z, Hardison RC, Snyder MP.

Nature. 2014 Nov 20;515(7527):371-5. doi: 10.1038/nature13985.

PMID:
25409826
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos J, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3366. No abstract available.

PMID:
25275169
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genome-wide map of regulatory interactions in the human genome.

Heidari N, Phanstiel DH, He C, Grubert F, Jahanbani F, Kasowski M, Zhang MQ, Snyder MP.

Genome Res. 2014 Dec;24(12):1905-17. doi: 10.1101/gr.176586.114. Epub 2014 Sep 16.

PMID:
25228660
[PubMed - in process]
Free PMC Article
6.

Shared functions of plant and mammalian StAR-related lipid transfer (START) domains in modulating transcription factor activity.

Schrick K, Bruno M, Khosla A, Cox PN, Marlatt SA, Roque RA, Nguyen HC, He C, Snyder MP, Singh D, Yadav G.

BMC Biol. 2014 Aug 27;12:70. doi: 10.1186/s12915-014-0070-8.

PMID:
25159688
[PubMed - in process]
Free PMC Article
7.

Defining a personal, allele-specific, and single-molecule long-read transcriptome.

Tilgner H, Grubert F, Sharon D, Snyder MP.

Proc Natl Acad Sci U S A. 2014 Jul 8;111(27):9869-74. doi: 10.1073/pnas.1400447111. Epub 2014 Jun 24.

PMID:
24961374
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures.

Phanstiel DH, Boyle AP, Araya CL, Snyder MP.

Bioinformatics. 2014 Oct;30(19):2808-10. doi: 10.1093/bioinformatics/btu379. Epub 2014 Jun 5.

PMID:
24903420
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Defining functional DNA elements in the human genome.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos JA, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6131-8. doi: 10.1073/pnas.1318948111. Epub 2014 Apr 21. Review.

PMID:
24753594
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Extended lifespan and reduced adiposity in mice lacking the FAT10 gene.

Canaan A, DeFuria J, Perelman E, Schultz V, Seay M, Tuck D, Flavell RA, Snyder MP, Obin MS, Weissman SM.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5313-8. doi: 10.1073/pnas.1323426111. Epub 2014 Mar 24.

PMID:
24706839
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Divergence in a master variator generates distinct phenotypes and transcriptional responses.

Gallagher JE, Zheng W, Rong X, Miranda N, Lin Z, Dunn B, Zhao H, Snyder MP.

Genes Dev. 2014 Feb 15;28(4):409-21. doi: 10.1101/gad.228940.113.

PMID:
24532717
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Landscape and variation of RNA secondary structure across the human transcriptome.

Wan Y, Qu K, Zhang QC, Flynn RA, Manor O, Ouyang Z, Zhang J, Spitale RC, Snyder MP, Segal E, Chang HY.

Nature. 2014 Jan 30;505(7485):706-9. doi: 10.1038/nature12946.

PMID:
24476892
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Specific plasma autoantibody reactivity in myelodysplastic syndromes.

Mias GI, Chen R, Zhang Y, Sridhar K, Sharon D, Xiao L, Im H, Snyder MP, Greenberg PL.

Sci Rep. 2013 Nov 22;3:3311. doi: 10.1038/srep03311.

PMID:
24264604
[PubMed - in process]
Free PMC Article
14.

Defective sphingosine 1-phosphate receptor 1 (S1P1) phosphorylation exacerbates TH17-mediated autoimmune neuroinflammation.

Garris CS, Wu L, Acharya S, Arac A, Blaho VA, Huang Y, Moon BS, Axtell RC, Ho PP, Steinberg GK, Lewis DB, Sobel RA, Han DK, Steinman L, Snyder MP, Hla T, Han MH.

Nat Immunol. 2013 Nov;14(11):1166-72. doi: 10.1038/ni.2730. Epub 2013 Sep 29.

PMID:
24076635
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Functional genomic screen of human stem cell differentiation reveals pathways involved in neurodevelopment and neurodegeneration.

Zhang Y, Schulz VP, Reed BD, Wang Z, Pan X, Mariani J, Euskirchen G, Snyder MP, Vaccarino FM, Ivanova N, Weissman SM, Szekely AM.

Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12361-6. doi: 10.1073/pnas.1309725110. Epub 2013 Jul 8.

PMID:
23836664
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Overview of high throughput sequencing technologies to elucidate molecular pathways in cardiovascular diseases.

Churko JM, Mantalas GL, Snyder MP, Wu JC.

Circ Res. 2013 Jun 7;112(12):1613-23. doi: 10.1161/CIRCRESAHA.113.300939. Review.

PMID:
23743227
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

High-throughput sequencing for biology and medicine.

Soon WW, Hariharan M, Snyder MP.

Mol Syst Biol. 2013;9:640. doi: 10.1038/msb.2012.61. Review.

PMID:
23340846
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Two methods for full-length RNA sequencing for low quantities of cells and single cells.

Pan X, Durrett RE, Zhu H, Tanaka Y, Li Y, Zi X, Marjani SL, Euskirchen G, Ma C, Lamotte RH, Park IH, Snyder MP, Mason CE, Weissman SM.

Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):594-9. doi: 10.1073/pnas.1217322109. Epub 2012 Dec 24.

PMID:
23267071
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The variable somatic genome.

O'Huallachain M, Weissman SM, Snyder MP.

Cell Cycle. 2013 Jan 1;12(1):5-6. doi: 10.4161/cc.23069. Epub 2012 Dec 19. No abstract available.

PMID:
23255102
[PubMed]
Free PMC Article
20.

Copy Number Variation detection from 1000 Genomes Project exon capture sequencing data.

Wu J, Grzeda KR, Stewart C, Grubert F, Urban AE, Snyder MP, Marth GT.

BMC Bioinformatics. 2012 Nov 17;13:305. doi: 10.1186/1471-2105-13-305.

PMID:
23157288
[PubMed - indexed for MEDLINE]
Free PMC Article
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