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Items: 1 to 20 of 49


A Partial Least Squares Based Procedure for Upstream Sequence Classification in Prokaryotes.

Mehmood T, Bohlin J, Snipen L.

IEEE/ACM Trans Comput Biol Bioinform. 2015 May-Jun;12(3):560-7. doi: 10.1109/TCBB.2014.2366146.


Comparing K-mer based methods for improved classification of 16S sequences.

Vinje H, Liland KH, Almøy T, Snipen L.

BMC Bioinformatics. 2015 Jul 1;16:205. doi: 10.1186/s12859-015-0647-4.


micropan: an R-package for microbial pan-genomics.

Snipen L, Liland KH.

BMC Bioinformatics. 2015 Mar 12;16:79. doi: 10.1186/s12859-015-0517-0.


A genomic virulence reference map of Enterococcus faecalis reveals an important contribution of phage03-like elements in nosocomial genetic lineages to pathogenicity in a Caenorhabditis elegans infection model.

La Rosa SL, Snipen LG, Murray BE, Willems RJ, Gilmore MS, Diep DB, Nes IF, Brede DA.

Infect Immun. 2015 May;83(5):2156-67. doi: 10.1128/IAI.02801-14. Epub 2015 Mar 16.


CNOGpro: detection and quantification of CNVs in prokaryotic whole-genome sequencing data.

Brynildsrud O, Snipen LG, Bohlin J.

Bioinformatics. 2015 Jun 1;31(11):1708-15. doi: 10.1093/bioinformatics/btv070. Epub 2015 Feb 1.


An evolutionary analysis of genome expansion and pathogenicity in Escherichia coli.

Bohlin J, Brynildsrud OB, Sekse C, Snipen L.

BMC Genomics. 2014 Oct 9;15:882. doi: 10.1186/1471-2164-15-882.


Rotation gene set testing for longitudinal expression data.

Dørum G, Snipen L, Solheim M, Saebø S.

Biom J. 2014 Nov;56(6):1055-75. doi: 10.1002/bimj.201100178. Epub 2014 Sep 22.


Transcriptomic and functional analysis of NaCl-induced stress in Enterococcus faecalis.

Solheim M, La Rosa SL, Mathisen T, Snipen LG, Nes IF, Brede DA.

PLoS One. 2014 Apr 22;9(4):e94571. doi: 10.1371/journal.pone.0094571. eCollection 2014.


Exact computation of the distribution of likelihood ratios with forensic applications.

Dørum G, Bleka Ø, Gill P, Haned H, Snipen L, Sæbø S, Egeland T.

Forensic Sci Int Genet. 2014 Mar;9:93-101. doi: 10.1016/j.fsigen.2013.11.008. Epub 2013 Dec 9.


A systematic search for discriminating sites in the 16S ribosomal RNA gene.

Vinje H, Almøy T, Liland KH, Snipen L.

Microb Inform Exp. 2014 Jan 27;4(1):2. doi: 10.1186/2042-5783-4-2.


Staphylococcus aureus nasal isolates from healthy individuals cause highly variable host cell responses in vitro: the Tromsø Staph and Skin Study.

Askarian F, Sangvik M, Hanssen AM, Snipen L, Sollid JU, Johannessen M.

Pathog Dis. 2014 Mar;70(2):158-66. doi: 10.1111/2049-632X.12099. Epub 2013 Oct 11.


Improving stability and understandability of genotype-phenotype mapping in Saccharomyces using regularized variable selection in L-PLS regression.

Mehmood T, Warringer J, Snipen L, Sæbø S.

BMC Bioinformatics. 2012 Dec 8;13:327. doi: 10.1186/1471-2105-13-327.


Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli.

Snipen L, Wassenaar TM, Altermann E, Olson J, Kathariou S, Lagesen K, Takamiya M, Knøchel S, Ussery DW, Meinersmann RJ.

Microb Inform Exp. 2012 Aug 28;2(1):8. doi: 10.1186/2042-5783-2-8.


Microarray-based transcriptome of Listeria monocytogenes adapted to sublethal concentrations of acetic acid, lactic acid, and hydrochloric acid.

Tessema GT, Møretrø T, Snipen L, Heir E, Holck A, Naterstad K, Axelsson L.

Can J Microbiol. 2012 Sep;58(9):1112-23. doi: 10.1139/w2012-091. Epub 2012 Aug 22.


Exploration of multivariate analysis in microbial coding sequence modeling.

Mehmood T, Bohlin J, Kristoffersen AB, Sæbø S, Warringer J, Snipen L.

BMC Bioinformatics. 2012 May 14;13:97. doi: 10.1186/1471-2105-13-97.


Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands.

Bohlin J, van Passel MW, Snipen L, Kristoffersen AB, Ussery D, Hardy SP.

BMC Genomics. 2012 Feb 10;13:66. doi: 10.1186/1471-2164-13-66.


A domain sequence approach to pangenomics: applications to Escherichia coli.

Snipen LG, Ussery DW.

Version 2. F1000Res. 2012 Oct 1 [revised 2013 May 29];1:19. doi: 10.12688/f1000research.1-19.v2. eCollection 2012.


A Partial Least Squares based algorithm for parsimonious variable selection.

Mehmood T, Martens H, Sæbø S, Warringer J, Snipen L.

Algorithms Mol Biol. 2011 Dec 5;6(1):27. doi: 10.1186/1748-7188-6-27.


Growth rate-dependent control in Enterococcus faecalis: effects on the transcriptome and proteome, and strong regulation of lactate dehydrogenase.

Mehmeti I, Faergestad EM, Bekker M, Snipen L, Nes IF, Holo H.

Appl Environ Microbiol. 2012 Jan;78(1):170-6. doi: 10.1128/AEM.06604-11. Epub 2011 Oct 28.


Target recognition, resistance, immunity and genome mining of class II bacteriocins from Gram-positive bacteria.

Kjos M, Borrero J, Opsata M, Birri DJ, Holo H, Cintas LM, Snipen L, Hernández PE, Nes IF, Diep DB.

Microbiology. 2011 Dec;157(Pt 12):3256-67. doi: 10.1099/mic.0.052571-0. Epub 2011 Oct 6. Review.

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