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Results: 1 to 20 of 42

1.

Transcriptomic and functional analysis of NaCl-induced stress in Enterococcus faecalis.

Solheim M, La Rosa SL, Mathisen T, Snipen LG, Nes IF, Brede DA.

PLoS One. 2014 Apr 22;9(4):e94571. doi: 10.1371/journal.pone.0094571. eCollection 2014.

PMID:
24755907
[PubMed - in process]
Free PMC Article
2.

Exact computation of the distribution of likelihood ratios with forensic applications.

Dørum G, Bleka Ø, Gill P, Haned H, Snipen L, Sæbø S, Egeland T.

Forensic Sci Int Genet. 2014 Mar;9:93-101. doi: 10.1016/j.fsigen.2013.11.008. Epub 2013 Dec 9.

PMID:
24528587
[PubMed - in process]
3.

A systematic search for discriminating sites in the 16S ribosomal RNA gene.

Vinje H, Almøy T, Liland KH, Snipen L.

Microb Inform Exp. 2014 Jan 27;4(1):2. doi: 10.1186/2042-5783-4-2.

PMID:
24467869
[PubMed]
Free PMC Article
4.

Staphylococcus aureus nasal isolates from healthy individuals cause highly variable host cell responses in vitro: the Tromsø Staph and Skin Study.

Askarian F, Sangvik M, Hanssen AM, Snipen L, Sollid JU, Johannessen M.

Pathog Dis. 2014 Mar;70(2):158-66. doi: 10.1111/2049-632X.12099. Epub 2013 Oct 11.

PMID:
24115641
[PubMed - in process]
5.

Improving stability and understandability of genotype-phenotype mapping in Saccharomyces using regularized variable selection in L-PLS regression.

Mehmood T, Warringer J, Snipen L, Sæbø S.

BMC Bioinformatics. 2012 Dec 8;13:327. doi: 10.1186/1471-2105-13-327.

PMID:
23216988
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli.

Snipen L, Wassenaar TM, Altermann E, Olson J, Kathariou S, Lagesen K, Takamiya M, Knøchel S, Ussery DW, Meinersmann RJ.

Microb Inform Exp. 2012 Aug 28;2(1):8. doi: 10.1186/2042-5783-2-8.

PMID:
22929701
[PubMed]
Free PMC Article
7.

Microarray-based transcriptome of Listeria monocytogenes adapted to sublethal concentrations of acetic acid, lactic acid, and hydrochloric acid.

Tessema GT, Møretrø T, Snipen L, Heir E, Holck A, Naterstad K, Axelsson L.

Can J Microbiol. 2012 Sep;58(9):1112-23. doi: 10.1139/w2012-091. Epub 2012 Aug 22.

PMID:
22913877
[PubMed - indexed for MEDLINE]
8.

Exploration of multivariate analysis in microbial coding sequence modeling.

Mehmood T, Bohlin J, Kristoffersen AB, Sæbø S, Warringer J, Snipen L.

BMC Bioinformatics. 2012 May 14;13:97. doi: 10.1186/1471-2105-13-97.

PMID:
22583558
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands.

Bohlin J, van Passel MW, Snipen L, Kristoffersen AB, Ussery D, Hardy SP.

BMC Genomics. 2012 Feb 10;13:66. doi: 10.1186/1471-2164-13-66.

PMID:
22325062
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A domain sequence approach to pangenomics: applications to Escherichia coli.

Snipen LG, Ussery DW.

Version 2. F1000Res. 2012 Oct 1 [revised 2013 May 29];1:19. doi: 10.12688/f1000research.1-19.v2. eCollection 2012.

PMID:
24555018
[PubMed]
Free PMC Article
11.

A Partial Least Squares based algorithm for parsimonious variable selection.

Mehmood T, Martens H, Sæbø S, Warringer J, Snipen L.

Algorithms Mol Biol. 2011 Dec 5;6(1):27. doi: 10.1186/1748-7188-6-27.

PMID:
22142365
[PubMed]
Free PMC Article
12.

Growth rate-dependent control in Enterococcus faecalis: effects on the transcriptome and proteome, and strong regulation of lactate dehydrogenase.

Mehmeti I, Faergestad EM, Bekker M, Snipen L, Nes IF, Holo H.

Appl Environ Microbiol. 2012 Jan;78(1):170-6. doi: 10.1128/AEM.06604-11. Epub 2011 Oct 28.

PMID:
22038603
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Target recognition, resistance, immunity and genome mining of class II bacteriocins from Gram-positive bacteria.

Kjos M, Borrero J, Opsata M, Birri DJ, Holo H, Cintas LM, Snipen L, Hernández PE, Nes IF, Diep DB.

Microbiology. 2011 Dec;157(Pt 12):3256-67. doi: 10.1099/mic.0.052571-0. Epub 2011 Oct 6. Review.

PMID:
21980118
[PubMed - indexed for MEDLINE]
Free Article
14.

Mining for genotype-phenotype relations in Saccharomyces using partial least squares.

Mehmood T, Martens H, Saebø S, Warringer J, Snipen L.

BMC Bioinformatics. 2011 Aug 3;12:318. doi: 10.1186/1471-2105-12-318.

PMID:
21812956
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Global transcriptome response in Lactobacillus sakei during growth on ribose.

McLeod A, Snipen L, Naterstad K, Axelsson L.

BMC Microbiol. 2011 Jun 24;11:145. doi: 10.1186/1471-2180-11-145.

PMID:
21702908
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Complete genome sequence of the commensal Enterococcus faecalis 62, isolated from a healthy Norwegian infant.

Brede DA, Snipen LG, Ussery DW, Nederbragt AJ, Nes IF.

J Bacteriol. 2011 May;193(9):2377-8. doi: 10.1128/JB.00183-11. Epub 2011 Mar 11.

PMID:
21398545
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Comparative genomics of Lactobacillus sakei with emphasis on strains from meat.

Nyquist OL, McLeod A, Brede DA, Snipen L, Aakra Å, Nes IF.

Mol Genet Genomics. 2011 Apr;285(4):297-311. doi: 10.1007/s00438-011-0608-1. Epub 2011 Mar 3.

PMID:
21369871
[PubMed - indexed for MEDLINE]
18.

Standard operating procedure for computing pangenome trees.

Snipen L, Ussery DW.

Stand Genomic Sci. 2010 Jan 28;2(1):135-41. doi: 10.4056/sigs.38923.

PMID:
21304685
[PubMed]
Free PMC Article
19.

Global transcriptional analysis of spontaneous sakacin P-resistant mutant strains of Listeria monocytogenes during growth on different sugars.

Tessema GT, Møretrø T, Snipen L, Axelsson L, Naterstad K.

PLoS One. 2011 Jan 6;6(1):e16192. doi: 10.1371/journal.pone.0016192.

PMID:
21253597
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comparative genomic analysis reveals significant enrichment of mobile genetic elements and genes encoding surface structure-proteins in hospital-associated clonal complex 2 Enterococcus faecalis.

Solheim M, Brekke MC, Snipen LG, Willems RJ, Nes IF, Brede DA.

BMC Microbiol. 2011 Jan 4;11:3. doi: 10.1186/1471-2180-11-3.

PMID:
21205308
[PubMed - indexed for MEDLINE]
Free PMC Article

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