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Results: 1 to 20 of 113

1.

Functional transcriptome analysis of the postnatal brain of the Ts1Cje mouse model for Down syndrome reveals global disruption of interferon-related molecular networks.

Ling KH, Hewitt CA, Tan KL, Cheah PS, Vidyadaran S, Lai MI, Lee HC, Simpson K, Hyde L, Pritchard MA, Smyth GK, Thomas T, Scott HS.

BMC Genomics. 2014 Jul 22;15(1):624. [Epub ahead of print]

PMID:
25052193
[PubMed - as supplied by publisher]
Free Article
2.

Regulation of germinal center responses and B-cell memory by the chromatin modifier MOZ.

Good-Jacobson KL, Chen Y, Voss AK, Smyth GK, Thomas T, Tarlinton D.

Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9585-90. doi: 10.1073/pnas.1402485111. Epub 2014 Jun 16.

PMID:
24979783
[PubMed - in process]
3.

Pax5 loss imposes a reversible differentiation block in B-progenitor acute lymphoblastic leukemia.

Liu GJ, Cimmino L, Jude JG, Hu Y, Witkowski MT, McKenzie MD, Kartal-Kaess M, Best SA, Tuohey L, Liao Y, Shi W, Mullighan CG, Farrar MA, Nutt SL, Smyth GK, Zuber J, Dickins RA.

Genes Dev. 2014 Jun 15;28(12):1337-50. doi: 10.1101/gad.240416.114.

PMID:
24939936
[PubMed - in process]
4.

De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly.

Lun AT, Smyth GK.

Nucleic Acids Res. 2014;42(11):e95. doi: 10.1093/nar/gku351. Epub 2014 May 22.

PMID:
24852250
[PubMed - in process]
Free PMC Article
5.

The BTB-ZF transcription factor Zbtb20 is driven by Irf4 to promote plasma cell differentiation and longevity.

Chevrier S, Emslie D, Shi W, Kratina T, Wellard C, Karnowski A, Erikci E, Smyth GK, Chowdhury K, Tarlinton D, Corcoran LM.

J Exp Med. 2014 May 5;211(5):827-40. doi: 10.1084/jem.20131831. Epub 2014 Apr 7.

PMID:
24711583
[PubMed - indexed for MEDLINE]
6.

Transcription factor IRF4 regulates germinal center cell formation through a B cell-intrinsic mechanism.

Willis SN, Good-Jacobson KL, Curtis J, Light A, Tellier J, Shi W, Smyth GK, Tarlinton DM, Belz GT, Corcoran LM, Kallies A, Nutt SL.

J Immunol. 2014 Apr 1;192(7):3200-6. doi: 10.4049/jimmunol.1303216. Epub 2014 Mar 3.

PMID:
24591370
[PubMed - indexed for MEDLINE]
7.

Voom: precision weights unlock linear model analysis tools for RNA-seq read counts.

Law CW, Chen Y, Shi W, Smyth GK.

Genome Biol. 2014 Feb 3;15(2):R29. [Epub ahead of print]

PMID:
24485249
[PubMed - as supplied by publisher]
Free PMC Article
8.

Susceptibility to acute rheumatic fever based on differential expression of genes involved in cytotoxicity, chemotaxis, and apoptosis.

Bryant PA, Smyth GK, Gooding T, Oshlack A, Harrington Z, Currie B, Carapetis JR, Robins-Browne R, Curtis N.

Infect Immun. 2014 Feb;82(2):753-61. doi: 10.1128/IAI.01152-13. Epub 2013 Dec 2.

PMID:
24478089
[PubMed - indexed for MEDLINE]
9.

Quantitative proteomic profiling reveals novel region-specific markers in the adult mouse brain.

Dagley LF, White CA, Liao Y, Shi W, Smyth GK, Orian JM, Emili A, Purcell AW.

Proteomics. 2014 Feb;14(2-3):241-61. doi: 10.1002/pmic.201300196. Epub 2014 Jan 6.

PMID:
24259518
[PubMed - in process]
10.

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

Liao Y, Smyth GK, Shi W.

Bioinformatics. 2014 Apr 1;30(7):923-30. doi: 10.1093/bioinformatics/btt656. Epub 2013 Nov 13.

PMID:
24227677
[PubMed - indexed for MEDLINE]
11.

Cell-type-specific transcriptional profiles of the dimorphic pathogen Penicillium marneffei reflect distinct reproductive, morphological, and environmental demands.

Pasricha S, Payne M, Canovas D, Pase L, Ngaosuwankul N, Beard S, Oshlack A, Smyth GK, Chaiyaroj SC, Boyce KJ, Andrianopoulos A.

G3 (Bethesda). 2013 Nov 6;3(11):1997-2014. doi: 10.1534/g3.113.006809.

PMID:
24062530
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The transcription factor IRF4 is essential for TCR affinity-mediated metabolic programming and clonal expansion of T cells.

Man K, Miasari M, Shi W, Xin A, Henstridge DC, Preston S, Pellegrini M, Belz GT, Smyth GK, Febbraio MA, Nutt SL, Kallies A.

Nat Immunol. 2013 Nov;14(11):1155-65. doi: 10.1038/ni.2710. Epub 2013 Sep 22.

PMID:
24056747
[PubMed - indexed for MEDLINE]
13.

Polycomb repressive complex 2 (PRC2) suppresses Eμ-myc lymphoma.

Lee SC, Phipson B, Hyland CD, Leong HS, Allan RS, Lun A, Hilton DJ, Nutt SL, Blewitt ME, Smyth GK, Alexander WS, Majewski IJ.

Blood. 2013 Oct 10;122(15):2654-63. doi: 10.1182/blood-2013-02-484055. Epub 2013 Aug 27.

PMID:
23982173
[PubMed - indexed for MEDLINE]
14.

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor.

Anders S, McCarthy DJ, Chen Y, Okoniewski M, Smyth GK, Huber W, Robinson MD.

Nat Protoc. 2013 Sep;8(9):1765-86. doi: 10.1038/nprot.2013.099. Epub 2013 Aug 22.

PMID:
23975260
[PubMed - indexed for MEDLINE]
15.

Identifying associations between genomic alterations in tumors.

George J, Gorringe KL, Smyth GK, Bowtell DD.

Methods Mol Biol. 2013;1049:9-19. doi: 10.1007/978-1-62703-547-7_2.

PMID:
23913205
[PubMed - indexed for MEDLINE]
16.

Targeting BCL-2 with the BH3 mimetic ABT-199 in estrogen receptor-positive breast cancer.

Vaillant F, Merino D, Lee L, Breslin K, Pal B, Ritchie ME, Smyth GK, Christie M, Phillipson LJ, Burns CJ, Mann GB, Visvader JE, Lindeman GJ.

Cancer Cell. 2013 Jul 8;24(1):120-9. doi: 10.1016/j.ccr.2013.06.002.

PMID:
23845444
[PubMed - indexed for MEDLINE]
17.

The use of miRNA microarrays for the analysis of cancer samples with global miRNA decrease.

Wu D, Hu Y, Tong S, Williams BR, Smyth GK, Gantier MP.

RNA. 2013 Jul;19(7):876-88. doi: 10.1261/rna.035055.112. Epub 2013 May 24.

PMID:
23709276
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Separate-channel analysis of two-channel microarrays: recovering inter-spot information.

Smyth GK, Altman NS.

BMC Bioinformatics. 2013 May 26;14:165. doi: 10.1186/1471-2105-14-165.

PMID:
23705896
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Nonequivalent gene expression and copy number alterations in high-grade serous ovarian cancers with BRCA1 and BRCA2 mutations.

George J, Alsop K, Etemadmoghadam D, Hondow H, Mikeska T, Dobrovic A, deFazio A; Australian Ovarian Cancer Study Group, Smyth GK, Levine DA, Mitchell G, Bowtell DD.

Clin Cancer Res. 2013 Jul 1;19(13):3474-84. doi: 10.1158/1078-0432.CCR-13-0066. Epub 2013 Apr 30.

PMID:
23633455
[PubMed - indexed for MEDLINE]
Free Article
20.

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote.

Liao Y, Smyth GK, Shi W.

Nucleic Acids Res. 2013 May 1;41(10):e108. doi: 10.1093/nar/gkt214. Epub 2013 Apr 4.

PMID:
23558742
[PubMed - indexed for MEDLINE]
Free PMC Article

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