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Results: 1 to 20 of 369

1.

Orchestrating high-throughput genomic analysis with Bioconductor.

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M.

Nat Methods. 2015 Jan 29;12(2):115-21. doi: 10.1038/nmeth.3252.

PMID:
25633503
[PubMed - in process]
2.

limma powers differential expression analyses for RNA-sequencing and microarray studies.

Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, Smyth GK.

Nucleic Acids Res. 2015 Jan 20. pii: gkv007. [Epub ahead of print]

PMID:
25605792
[PubMed - as supplied by publisher]
Free Article
3.

MOZ regulates B cell progenitors and, consequently, Moz haploinsufficiency dramatically retards MYC-induced lymphoma development.

Sheikh BN, Lee SC, El-Saafin F, Vanyai HK, Hu Y, Pang SH, Grabow S, Strasser A, Nutt SL, Alexander WS, Smyth GK, Voss AK, Thomas T.

Blood. 2015 Jan 20. pii: blood-2014-08-594655. [Epub ahead of print]

PMID:
25605372
[PubMed - as supplied by publisher]
4.

The transcriptional regulators IRF4, BATF and IL-33 orchestrate development and maintenance of adipose tissue-resident regulatory T cells.

Vasanthakumar A, Moro K, Xin A, Liao Y, Gloury R, Kawamoto S, Fagarasan S, Mielke LA, Afshar-Sterle S, Masters SL, Nakae S, Saito H, Wentworth JM, Li P, Liao W, Leonard WJ, Smyth GK, Shi W, Nutt SL, Koyasu S, Kallies A.

Nat Immunol. 2015 Jan 19. doi: 10.1038/ni.3085. [Epub ahead of print]

PMID:
25599561
[PubMed - as supplied by publisher]
5.

Single centre experience of hypothermic machine perfusion of kidneys from extended criteria deceased heart-beating donors: a comparative study.

Forde JC, Shields WP, Azhar M, Daly PJ, Zimmermann JA, Smyth GP, Eng MP, Power RE, Mohan P, Hickey DP, Little DM.

Ir J Med Sci. 2014 Dec 5. [Epub ahead of print]

PMID:
25472824
[PubMed - as supplied by publisher]
6.

Peripheral natural killer cell maturation depends on the transcription factor Aiolos.

Holmes ML, Huntington ND, Thong RP, Brady J, Hayakawa Y, Andoniou CE, Fleming P, Shi W, Smyth GK, Degli-Esposti MA, Belz GT, Kallies A, Carotta S, Smyth MJ, Nutt SL.

EMBO J. 2014 Nov 18;33(22):2721-34. doi: 10.15252/embj.201487900. Epub 2014 Oct 15.

PMID:
25319415
[PubMed - in process]
7.

Radiotherapy staffing in the European countries: final results from the ESTRO-HERO survey.

Lievens Y, Defourny N, Coffey M, Borras JM, Dunscombe P, Slotman B, Malicki J, Bogusz M, Gasparotto C, Grau C; HERO Consortium, Kokobobo A, Sedlmayer F, Slobina E, Coucke P, Gabrovski R, Vosmik M, Eriksen JG, Jaal J, Dejean C, Polgar C, Johannsson J, Cunningham M, Atkocius V, Back C, Pirotta M, Karadjinovic V, Levernes S, Maciejewski B, Trigo ML, Šegedin B, Palacios A, Pastoors B, Beardmore C, Erridge S, Smyth G, Cleries Soler R.

Radiother Oncol. 2014 Aug;112(2):178-86. doi: 10.1016/j.radonc.2014.08.034. Epub 2014 Nov 12.

PMID:
25300718
[PubMed - in process]
Free Article
8.

Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures.

Munro SA, Lund SP, Pine PS, Binder H, Clevert DA, Conesa A, Dopazo J, Fasold M, Hochreiter S, Hong H, Jafari N, Kreil DP, Łabaj PP, Li S, Liao Y, Lin SM, Meehan J, Mason CE, Santoyo-Lopez J, Setterquist RA, Shi L, Shi W, Smyth GK, Stralis-Pavese N, Su Z, Tong W, Wang C, Wang J, Xu J, Ye Z, Yang Y, Yu Y, Salit M.

Nat Commun. 2014 Sep 25;5:5125. doi: 10.1038/ncomms6125.

PMID:
25254650
[PubMed - in process]
9.

A lineage of diploid platelet-forming cells precedes polyploid megakaryocyte formation in the mouse embryo.

Potts KS, Sargeant TJ, Markham JF, Shi W, Biben C, Josefsson EC, Whitehead LW, Rogers KL, Liakhovitskaia A, Smyth GK, Kile BT, Medvinsky A, Alexander WS, Hilton DJ, Taoudi S.

Blood. 2014 Oct 23;124(17):2725-9. doi: 10.1182/blood-2014-02-559468. Epub 2014 Jul 25.

PMID:
25079356
[PubMed - indexed for MEDLINE]
10.

Functional transcriptome analysis of the postnatal brain of the Ts1Cje mouse model for Down syndrome reveals global disruption of interferon-related molecular networks.

Ling KH, Hewitt CA, Tan KL, Cheah PS, Vidyadaran S, Lai MI, Lee HC, Simpson K, Hyde L, Pritchard MA, Smyth GK, Thomas T, Scott HS.

BMC Genomics. 2014 Jul 22;15:624. doi: 10.1186/1471-2164-15-624.

PMID:
25052193
[PubMed - in process]
Free PMC Article
11.

Adipose tissue mitochondrial dysfunction triggers a lipodystrophic syndrome with insulin resistance, hepatosteatosis, and cardiovascular complications.

Vernochet C, Damilano F, Mourier A, Bezy O, Mori MA, Smyth G, Rosenzweig A, Larsson NG, Kahn CR.

FASEB J. 2014 Oct;28(10):4408-19. doi: 10.1096/fj.14-253971. Epub 2014 Jul 8.

PMID:
25005176
[PubMed - indexed for MEDLINE]
12.

Regulation of germinal center responses and B-cell memory by the chromatin modifier MOZ.

Good-Jacobson KL, Chen Y, Voss AK, Smyth GK, Thomas T, Tarlinton D.

Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9585-90. doi: 10.1073/pnas.1402485111. Epub 2014 Jun 16.

PMID:
24979783
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Pax5 loss imposes a reversible differentiation block in B-progenitor acute lymphoblastic leukemia.

Liu GJ, Cimmino L, Jude JG, Hu Y, Witkowski MT, McKenzie MD, Kartal-Kaess M, Best SA, Tuohey L, Liao Y, Shi W, Mullighan CG, Farrar MA, Nutt SL, Smyth GK, Zuber J, Dickins RA.

Genes Dev. 2014 Jun 15;28(12):1337-50. doi: 10.1101/gad.240416.114.

PMID:
24939936
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Colonisation with methicillin-resistant Staphylococcus aureus prior to renal transplantation is associated with long-term renal allograft failure.

Moore C, Davis NF, Burke JP, Power R, Mohan P, Hickey D, Smyth G, Eng M, Little DM.

Transpl Int. 2014 Sep;27(9):926-30. doi: 10.1111/tri.12357. Epub 2014 Jul 7.

PMID:
24853293
[PubMed - in process]
15.

De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly.

Lun AT, Smyth GK.

Nucleic Acids Res. 2014 Jun;42(11):e95. doi: 10.1093/nar/gku351. Epub 2014 May 22.

PMID:
24852250
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Ex vivo reconstruction of the donor renal artery in renal transplantation: a case-control study.

McLoughlin LC, Davis NF, Dowling CM, Power RE, Mohan P, Hickey DP, Smyth GP, Eng MM, Little DM.

Transpl Int. 2014 May;27(5):458-66.

PMID:
24851246
[PubMed - indexed for MEDLINE]
17.

The BTB-ZF transcription factor Zbtb20 is driven by Irf4 to promote plasma cell differentiation and longevity.

Chevrier S, Emslie D, Shi W, Kratina T, Wellard C, Karnowski A, Erikci E, Smyth GK, Chowdhury K, Tarlinton D, Corcoran LM.

J Exp Med. 2014 May 5;211(5):827-40. doi: 10.1084/jem.20131831. Epub 2014 Apr 7.

PMID:
24711583
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Transcription factor IRF4 regulates germinal center cell formation through a B cell-intrinsic mechanism.

Willis SN, Good-Jacobson KL, Curtis J, Light A, Tellier J, Shi W, Smyth GK, Tarlinton DM, Belz GT, Corcoran LM, Kallies A, Nutt SL.

J Immunol. 2014 Apr 1;192(7):3200-6. doi: 10.4049/jimmunol.1303216. Epub 2014 Mar 3.

PMID:
24591370
[PubMed - indexed for MEDLINE]
19.

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts.

Law CW, Chen Y, Shi W, Smyth GK.

Genome Biol. 2014 Feb 3;15(2):R29. doi: 10.1186/gb-2014-15-2-r29.

PMID:
24485249
[PubMed - in process]
Free PMC Article
20.

Susceptibility to acute rheumatic fever based on differential expression of genes involved in cytotoxicity, chemotaxis, and apoptosis.

Bryant PA, Smyth GK, Gooding T, Oshlack A, Harrington Z, Currie B, Carapetis JR, Robins-Browne R, Curtis N.

Infect Immun. 2014 Feb;82(2):753-61. doi: 10.1128/IAI.01152-13. Epub 2013 Dec 2.

PMID:
24478089
[PubMed - indexed for MEDLINE]
Free PMC Article

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