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An Optimized Informatics Pipeline for Mass Spectrometry-Based Peptidomics.

Wu C, Monroe ME, Xu Z, Slysz GW, Payne SH, Rodland KD, Liu T, Smith RD.

J Am Soc Mass Spectrom. 2015 May 27. [Epub ahead of print]


Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations.

Zhang X, Garimella SV, Prost SA, Webb IK, Chen TC, Tang K, Tolmachev AV, Norheim RV, Baker ES, Anderson GA, Ibrahim YM, Smith RD.

Anal Chem. 2015 May 26. [Epub ahead of print]


Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus.

Kebaabetswe LP, Haick AK, Gritsenko MA, Fillmore TL, Chu RK, Purvine SO, Webb-Robertson BJ, Matzke MM, Smith RD, Waters KM, Metz TO, Miura TA.

Virology. 2015 May 8;483:96-107. doi: 10.1016/j.virol.2015.03.045. [Epub ahead of print]


Improving regulatory capacity to manage risks associated with trade agreements.

Walls HL, Smith RD, Drahos P.

Global Health. 2015 Mar 21;11(1):14. doi: 10.1186/s12992-015-0099-7.


Analytical platform evaluation for quantification of ERG in prostate cancer using protein and mRNA detection methods.

He J, Schepmoes AA, Shi T, Wu C, Fillmore TL, Gao Y, Smith RD, Qian WJ, Rodland KD, Liu T, Camp DG 2nd, Rastogi A, Tan SH, Yan W, Mohamed AA, Huang W, Banerjee S, Kagan J, Srivastava S, McLeod DG, Srivastava S, Petrovics G, Dobi A, Srinivasan A.

J Transl Med. 2015 Feb 12;13(1):54. doi: 10.1186/s12967-015-0418-z.


Use and cumulation of evidence from modelling studies to inform policy on food taxes and subsidies: biting off more than we can chew?

Shemilt I, Marteau TM, Smith RD, Ogilvie D.

BMC Public Health. 2015 Mar 27;15:297. doi: 10.1186/s12889-015-1641-5.


Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics.

Webb-Robertson BJ, Wiberg HK, Matzke MM, Brown JN, Wang J, McDermott JE, Smith RD, Rodland KD, Metz TO, Pounds JG, Waters KM.

J Proteome Res. 2015 May 1;14(5):1993-2001. doi: 10.1021/pr501138h. Epub 2015 Apr 22.


Implications for the NHS of inward and outward medical tourism: a policy and economic analysis using literature review and mixed-methods approaches.

Lunt N, Smith RD, Mannion R, Green ST, Exworthy M, Hanefeld J, Horsfall D, Machin L, King H.

Southampton (UK): NIHR Journals Library; 2014 Jan.


Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO₂.

Yu J, Liberton M, Cliften PF, Head RD, Jacobs JM, Smith RD, Koppenaal DW, Brand JJ, Pakrasi HB.

Sci Rep. 2015 Jan 30;5:8132. doi: 10.1038/srep08132.


A comparative analysis of media reporting of perceived risks and benefits of genetically modified crops and foods in Kenyan and international newspapers.

DeRosier C, Sulemana I, James HS Jr, Valdivia C, Folk W, Smith RD.

Public Underst Sci. 2015 Jan 19. pii: 0963662514568061. [Epub ahead of print]


Improved ion optics for introduction of ions into a 9.4-T Fourier transform ion cyclotron resonance mass spectrometer.

Chen Y, Leach FE 3rd, Kaiser NK, Dang X, Ibrahim YM, Norheim RV, Anderson GA, Smith RD, Marshall AG.

J Mass Spectrom. 2015 Jan;50(1):280-4. doi: 10.1002/jms.3523.


Perturbations in the urinary exosome in transplant rejection.

Sigdel TK, Ng YW, Lee S, Nicora CD, Qian WJ, Smith RD, Camp DG 2nd, Sarwal MM.

Front Med (Lausanne). 2015 Jan 5;1:57. doi: 10.3389/fmed.2014.00057. eCollection 2014.


Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light-dark cycle.

Welkie D, Zhang X, Markillie ML, Taylor R, Orr G, Jacobs J, Bhide K, Thimmapuram J, Gritsenko M, Mitchell H, Smith RD, Sherman LA.

BMC Genomics. 2014 Dec 29;15:1185. doi: 10.1186/1471-2164-15-1185.


Sensitive targeted quantification of ERK phosphorylation dynamics and stoichiometry in human cells without affinity enrichment.

Shi T, Gao Y, Gaffrey MJ, Nicora CD, Fillmore TL, Chrisler WB, Gritsenko MA, Wu C, He J, Bloodsworth KJ, Zhao R, Camp DG 2nd, Liu T, Rodland KD, Smith RD, Wiley HS, Qian WJ.

Anal Chem. 2015 Jan 20;87(2):1103-10. doi: 10.1021/ac503797x. Epub 2014 Dec 31.


Changes in protein expression across laboratory and field experiments in Geobacter bemidjiensis.

Merkley ED, Wrighton KC, Castelle CJ, Anderson BJ, Wilkins MJ, Shah V, Arbour T, Brown JN, Singer SW, Smith RD, Lipton MS.

J Proteome Res. 2015 Mar 6;14(3):1361-75. doi: 10.1021/pr500983v. Epub 2015 Feb 3.


Survival probability loss from percutaneous coronary intervention compared with coronary artery bypass grafting across age groups.

Benedetto U, Amrani M, Bahrami T, Gaer J, De Robertis F, Smith RD, Raja SG; Harefield Cardiac Outcomes Research Group.

J Thorac Cardiovasc Surg. 2015 Feb;149(2):479-84. doi: 10.1016/j.jtcvs.2014.10.032. Epub 2014 Oct 15.


Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM.

Mol Cell Proteomics. 2014 Dec;13(12):3639-46. doi: 10.1074/mcp.M113.030932.


HAM-5 functions as a MAP kinase scaffold during cell fusion in Neurospora crassa.

Jonkers W, Leeder AC, Ansong C, Wang Y, Yang F, Starr TL, Camp DG 2nd, Smith RD, Glass NL.

PLoS Genet. 2014 Nov 20;10(11):e1004783. doi: 10.1371/journal.pgen.1004783. eCollection 2014 Nov.


Proteomic approaches for site-specific O-GlcNAcylation analysis.

Wang S, Yang F, Camp DG 2nd, Rodland K, Qian WJ, Liu T, Smith RD.

Bioanalysis. 2014;6(19):2571-80. doi: 10.4155/bio.14.239.


Rectangular ion funnel: a new ion funnel interface for structures for lossless ion manipulations.

Chen TC, Webb IK, Prost SA, Harrer MB, Norheim RV, Tang K, Ibrahim YM, Smith RD.

Anal Chem. 2015 Jan 6;87(1):716-22. doi: 10.1021/ac503564c. Epub 2014 Dec 8.

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