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Results: 1 to 20 of 177

1.

The effective founder effect in a spatially expanding population.

Peter BM, Slatkin M.

Evolution. 2015 Mar;69(3):721-34. doi: 10.1111/evo.12609. Epub 2015 Mar 10.

PMID:
25656983
2.

New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa.

Macholdt E, Slatkin M, Pakendorf B, Stoneking M.

Am J Phys Anthropol. 2015 Apr;156(4):661-4. doi: 10.1002/ajpa.22675. Epub 2014 Dec 2.

PMID:
25448164
3.

A hidden Markov model for investigating recent positive selection through haplotype structure.

Chen H, Hey J, Slatkin M.

Theor Popul Biol. 2015 Feb;99:18-30. doi: 10.1016/j.tpb.2014.11.001. Epub 2014 Nov 13.

PMID:
25446961
4.

Genome sequence of a 45,000-year-old modern human from western Siberia.

Fu Q, Li H, Moorjani P, Jay F, Slepchenko SM, Bondarev AA, Johnson PL, Aximu-Petri A, Prüfer K, de Filippo C, Meyer M, Zwyns N, Salazar-García DC, Kuzmin YV, Keates SG, Kosintsev PA, Razhev DI, Richards MP, Peristov NV, Lachmann M, Douka K, Higham TF, Slatkin M, Hublin JJ, Reich D, Kelso J, Viola TB, Pääbo S.

Nature. 2014 Oct 23;514(7523):445-9. doi: 10.1038/nature13810.

PMID:
25341783
5.

The projection of a test genome onto a reference population and applications to humans and archaic hominins.

Yang MA, Harris K, Slatkin M.

Genetics. 2014 Dec;198(4):1655-70. doi: 10.1534/genetics.112.145359. Epub 2014 Oct 15.

PMID:
25324161
6.

Ancient human genomes suggest three ancestral populations for present-day Europeans.

Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, Nordenfelt S, Li H, de Filippo C, Prüfer K, Sawyer S, Posth C, Haak W, Hallgren F, Fornander E, Rohland N, Delsate D, Francken M, Guinet JM, Wahl J, Ayodo G, Babiker HA, Bailliet G, Balanovska E, Balanovsky O, Barrantes R, Bedoya G, Ben-Ami H, Bene J, Berrada F, Bravi CM, Brisighelli F, Busby GB, Cali F, Churnosov M, Cole DE, Corach D, Damba L, van Driem G, Dryomov S, Dugoujon JM, Fedorova SA, Gallego Romero I, Gubina M, Hammer M, Henn BM, Hervig T, Hodoglugil U, Jha AR, Karachanak-Yankova S, Khusainova R, Khusnutdinova E, Kittles R, Kivisild T, Klitz W, Kučinskas V, Kushniarevich A, Laredj L, Litvinov S, Loukidis T, Mahley RW, Melegh B, Metspalu E, Molina J, Mountain J, Näkkäläjärvi K, Nesheva D, Nyambo T, Osipova L, Parik J, Platonov F, Posukh O, Romano V, Rothhammer F, Rudan I, Ruizbakiev R, Sahakyan H, Sajantila A, Salas A, Starikovskaya EB, Tarekegn A, Toncheva D, Turdikulova S, Uktveryte I, Utevska O, Vasquez R, Villena M, Voevoda M, Winkler CA, Yepiskoposyan L, Zalloua P, Zemunik T, Cooper A, Capelli C, Thomas MG, Ruiz-Linares A, Tishkoff SA, Singh L, Thangaraj K, Villems R, Comas D, Sukernik R, Metspalu M, Meyer M, Eichler EE, Burger J, Slatkin M, Pääbo S, Kelso J, Reich D, Krause J.

Nature. 2014 Sep 18;513(7518):409-13. doi: 10.1038/nature13673.

7.

A test for ancient selective sweeps and an application to candidate sites in modern humans.

Racimo F, Kuhlwilm M, Slatkin M.

Mol Biol Evol. 2014 Dec;31(12):3344-58. doi: 10.1093/molbev/msu255. Epub 2014 Aug 28.

8.

Tracing pastoralist migrations to southern Africa with lactase persistence alleles.

Macholdt E, Lede V, Barbieri C, Mpoloka SW, Chen H, Slatkin M, Pakendorf B, Stoneking M.

Curr Biol. 2014 Apr 14;24(8):875-9. doi: 10.1016/j.cub.2014.03.027. Epub 2014 Apr 3.

9.

The complete genome sequence of a Neanderthal from the Altai Mountains.

Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, Kuhlwilm M, Lachmann M, Meyer M, Ongyerth M, Siebauer M, Theunert C, Tandon A, Moorjani P, Pickrell J, Mullikin JC, Vohr SH, Green RE, Hellmann I, Johnson PL, Blanche H, Cann H, Kitzman JO, Shendure J, Eichler EE, Lein ES, Bakken TE, Golovanova LV, Doronichev VB, Shunkov MV, Derevianko AP, Viola B, Slatkin M, Reich D, Kelso J, Pääbo S.

Nature. 2014 Jan 2;505(7481):43-9. doi: 10.1038/nature12886. Epub 2013 Dec 18.

10.

Detecting range expansions from genetic data.

Peter BM, Slatkin M.

Evolution. 2013 Nov;67(11):3274-89. doi: 10.1111/evo.12202. Epub 2013 Aug 27.

11.

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus.

Frantz LA, Schraiber JG, Madsen O, Megens HJ, Bosse M, Paudel Y, Semiadi G, Meijaard E, Li N, Crooijmans RP, Archibald AL, Slatkin M, Schook LB, Larson G, Groenen MA.

Genome Biol. 2013;14(9):R107.

12.

A method for estimating the effective number of loci affecting a quantitative character.

Slatkin M.

Theor Popul Biol. 2013 Nov;89:44-54. doi: 10.1016/j.tpb.2013.08.002. Epub 2013 Aug 22.

13.

The influence of relatives on the efficiency and error rate of familial searching.

Rohlfs RV, Murphy E, Song YS, Slatkin M.

PLoS One. 2013 Aug 14;8(8):e70495. doi: 10.1371/journal.pone.0070495. eCollection 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/2544c2e3-0065-4d14-ab1c-3d3fcb0fee84.

14.

Inferring selection intensity and allele age from multilocus haplotype structure.

Chen H, Slatkin M.

G3 (Bethesda). 2013 Aug 7;3(8):1429-42. doi: 10.1534/g3.113.006197.

15.

Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution.

Cahill JA, Green RE, Fulton TL, Stiller M, Jay F, Ovsyanikov N, Salamzade R, St John J, Stirling I, Slatkin M, Shapiro B.

PLoS Genet. 2013;9(3):e1003345. doi: 10.1371/journal.pgen.1003345. Epub 2013 Mar 14.

16.

Higher levels of neanderthal ancestry in East Asians than in Europeans.

Wall JD, Yang MA, Jay F, Kim SK, Durand EY, Stevison LS, Gignoux C, Woerner A, Hammer MF, Slatkin M.

Genetics. 2013 May;194(1):199-209. doi: 10.1534/genetics.112.148213. Epub 2013 Feb 14.

17.

A sequence-based approach demonstrates that balancing selection in classical human leukocyte antigen (HLA) loci is asymmetric.

Bronson PG, Mack SJ, Erlich HA, Slatkin M.

Hum Mol Genet. 2013 Jan 15;22(2):252-61. doi: 10.1093/hmg/dds424. Epub 2012 Oct 12.

18.

Genomic tests of variation in inbreeding among individuals and among chromosomes.

Schraiber JG, Shih S, Slatkin M.

Genetics. 2012 Dec;192(4):1477-82. doi: 10.1534/genetics.112.145367. Epub 2012 Oct 10.

19.

Paleopopulation genetics.

Wall JD, Slatkin M.

Annu Rev Genet. 2012;46:635-49. doi: 10.1146/annurev-genet-110711-155557. Epub 2012 Sep 17. Review.

PMID:
22994357
20.

A high-coverage genome sequence from an archaic Denisovan individual.

Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, Tandon A, Siebauer M, Green RE, Bryc K, Briggs AW, Stenzel U, Dabney J, Shendure J, Kitzman J, Hammer MF, Shunkov MV, Derevianko AP, Patterson N, Andrés AM, Eichler EE, Slatkin M, Reich D, Kelso J, Pääbo S.

Science. 2012 Oct 12;338(6104):222-6. doi: 10.1126/science.1224344. Epub 2012 Aug 30.

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