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Results: 1 to 20 of 245

1.

Metabolomics identifies the intersection of phosphoethanolamine with menaquinone-triggered apoptosis in an in vitro model of leukemia.

Dhakshinamoorthy S, Dinh NT, Skolnick J, Styczynski MP.

Mol Biosyst. 2015 Jul 15. [Epub ahead of print]

PMID:
26175011
2.

183 On the origin and completeness of ligand binding pockets with applications to drug discovery.

Skolnick J.

J Biomol Struct Dyn. 2015 May;33 Suppl 1:121. doi: 10.1080/07391102.2015.1032820. No abstract available.

PMID:
26103393
3.

Comprehensive prediction of drug-protein interactions and side effects for the human proteome.

Zhou H, Gao M, Skolnick J.

Sci Rep. 2015 Jun 9;5:11090. doi: 10.1038/srep11090.

4.

Insights into Disease-Associated Mutations in the Human Proteome through Protein Structural Analysis.

Gao M, Zhou H, Skolnick J.

Structure. 2015 Jul 7;23(7):1362-9. doi: 10.1016/j.str.2015.03.028. Epub 2015 May 28.

PMID:
26027735
5.

Hurt, tired and queasy: Specific variants in the ATPase domain of the TRAP1 mitochondrial chaperone are associated with common, chronic "functional" symptomatology including pain, fatigue and gastrointestinal dysmotility.

Boles RG, Hornung HA, Moody AE, Ortiz TB, Wong SA, Eggington JM, Stanley CM, Gao M, Zhou H, McLaughlin S, Zare AS, Sheldon KM, Skolnick J, McKernan KJ.

Mitochondrion. 2015 Jul;23:64-70. doi: 10.1016/j.mito.2015.05.002. Epub 2015 May 27.

PMID:
26022780
6.

GS-align for glycan structure alignment and similarity measurement.

Lee HS, Jo S, Mukherjee S, Park SJ, Skolnick J, Lee J, Im W.

Bioinformatics. 2015 Apr 8. pii: btv202. [Epub ahead of print]

PMID:
25857669
8.

Implications of the small number of distinct ligand binding pockets in proteins for drug discovery, evolution and biochemical function.

Skolnick J, Gao M, Roy A, Srinivasan B, Zhou H.

Bioorg Med Chem Lett. 2015 Mar 15;25(6):1163-70. doi: 10.1016/j.bmcl.2015.01.059. Epub 2015 Feb 3. Review.

9.

Sliding of proteins non-specifically bound to DNA: Brownian dynamics studies with coarse-grained protein and DNA models.

Ando T, Skolnick J.

PLoS Comput Biol. 2014 Dec 11;10(12):e1003990. doi: 10.1371/journal.pcbi.1003990. eCollection 2014 Dec.

10.

On the role of physics and evolution in dictating protein structure and function.

Skolnick J, Gao M, Zhou H.

Isr J Chem. 2014 Aug 1;54(8-9):1176-1188.

PMID:
25484448
11.

LIGSIFT: an open-source tool for ligand structural alignment and virtual screening.

Roy A, Skolnick J.

Bioinformatics. 2015 Feb 15;31(4):539-44. doi: 10.1093/bioinformatics/btu692. Epub 2014 Oct 21.

PMID:
25336501
12.

Experimental validation of FINDSITE(comb) virtual ligand screening results for eight proteins yields novel nanomolar and micromolar binders.

Srinivasan B, Zhou H, Kubanek J, Skolnick J.

J Cheminform. 2014 Apr 26;6:16. doi: 10.1186/1758-2946-6-16. eCollection 2014.

13.

WeFold: a coopetition for protein structure prediction.

Khoury GA, Liwo A, Khatib F, Zhou H, Chopra G, Bacardit J, Bortot LO, Faccioli RA, Deng X, He Y, Krupa P, Li J, Mozolewska MA, Sieradzan AK, Smadbeck J, Wirecki T, Cooper S, Flatten J, Xu K, Baker D, Cheng J, Delbem AC, Floudas CA, Keasar C, Levitt M, Popović Z, Scheraga HA, Skolnick J, Crivelli SN; Foldit Players.

Proteins. 2014 Sep;82(9):1850-68. doi: 10.1002/prot.24538. Epub 2014 Jul 8.

PMID:
24677212
14.

A comprehensive survey of small-molecule binding pockets in proteins.

Gao M, Skolnick J.

PLoS Comput Biol. 2013 Oct;9(10):e1003302. doi: 10.1371/journal.pcbi.1003302. Epub 2013 Oct 24.

15.
16.

Interplay of physics and evolution in the likely origin of protein biochemical function.

Skolnick J, Gao M.

Proc Natl Acad Sci U S A. 2013 Jun 4;110(23):9344-9. doi: 10.1073/pnas.1300011110. Epub 2013 May 20.

17.

Theory and simulation.

Friesner RA, Skolnick J.

Curr Opin Struct Biol. 2013 Apr;23(2):169-71. doi: 10.1016/j.sbi.2013.03.002. Epub 2013 May 18. No abstract available.

PMID:
23688932
18.

Segment assembly, structure alignment and iterative simulation in protein structure prediction.

Zhang Y, Skolnick J.

BMC Biol. 2013 Apr 15;11:44. doi: 10.1186/1741-7007-11-44. No abstract available.

19.

Restricted N-glycan conformational space in the PDB and its implication in glycan structure modeling.

Jo S, Lee HS, Skolnick J, Im W.

PLoS Comput Biol. 2013;9(3):e1002946. doi: 10.1371/journal.pcbi.1002946. Epub 2013 Mar 14.

20.
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