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Results: 1 to 20 of 33

1.

Analysis of the p53/CEP-1 regulated non-coding transcriptome in C. elegans by an NSR-seq strategy.

Xu D, Wei G, Lu P, Luo J, Chen X, Skogerbø G, Chen R.

Protein Cell. 2014 May 21. [Epub ahead of print]

PMID:
24844773
[PubMed - as supplied by publisher]
2.

Evolutionary relationships between miRNA genes and their activity.

Zhu Y, Skogerbø G, Ning Q, Wang Z, Li B, Yang S, Sun H, Li Y.

BMC Genomics. 2012 Dec 22;13:718. doi: 10.1186/1471-2164-13-718.

PMID:
23259970
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The human microbiome: a hot spot of microbial horizontal gene transfer.

Liu L, Chen X, Skogerbø G, Zhang P, Chen R, He S, Huang DW.

Genomics. 2012 Nov;100(5):265-70. doi: 10.1016/j.ygeno.2012.07.012. Epub 2012 Jul 25.

PMID:
22841660
[PubMed - indexed for MEDLINE]
Free Article
4.

Distinct MicroRNA Subcellular Size and Expression Patterns in Human Cancer Cells.

Chen B, Zhang B, Luo H, Yuan J, Skogerbø G, Chen R.

Int J Cell Biol. 2012;2012:672462. doi: 10.1155/2012/672462. Epub 2012 Feb 12.

PMID:
22505932
[PubMed]
Free PMC Article
5.

Integrated sequence-structure motifs suffice to identify microRNA precursors.

Liu X, He S, Skogerbø G, Gong F, Chen R.

PLoS One. 2012;7(3):e32797. doi: 10.1371/journal.pone.0032797. Epub 2012 Mar 15.

PMID:
22438883
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A differential sequencing-based analysis of the C. elegans noncoding transcriptome.

Xiao T, Wang Y, Luo H, Liu L, Wei G, Chen X, Sun Y, Chen X, Skogerbø G, Chen R.

RNA. 2012 Apr;18(4):626-39. doi: 10.1261/rna.030965.111. Epub 2012 Feb 16.

PMID:
22345127
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

NONCODE v3.0: integrative annotation of long noncoding RNAs.

Bu D, Yu K, Sun S, Xie C, Skogerbø G, Miao R, Xiao H, Liao Q, Luo H, Zhao G, Zhao H, Liu Z, Liu C, Chen R, Zhao Y.

Nucleic Acids Res. 2012 Jan;40(Database issue):D210-5. doi: 10.1093/nar/gkr1175. Epub 2011 Dec 1.

PMID:
22135294
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

ncFANs: a web server for functional annotation of long non-coding RNAs.

Liao Q, Xiao H, Bu D, Xie C, Miao R, Luo H, Zhao G, Yu K, Zhao H, Skogerbø G, Chen R, Wu Z, Liu C, Zhao Y.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W118-24. doi: 10.1093/nar/gkr432.

PMID:
21715382
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression.

Wang Y, Chen J, Wei G, He H, Zhu X, Xiao T, Yuan J, Dong B, He S, Skogerbø G, Chen R.

Nucleic Acids Res. 2011 Jul;39(12):5203-14. doi: 10.1093/nar/gkr102. Epub 2011 Mar 4.

PMID:
21378118
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network.

Liao Q, Liu C, Yuan X, Kang S, Miao R, Xiao H, Zhao G, Luo H, Bu D, Zhao H, Skogerbø G, Wu Z, Zhao Y.

Nucleic Acids Res. 2011 May;39(9):3864-78. doi: 10.1093/nar/gkq1348. Epub 2011 Jan 18.

PMID:
21247874
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Systematic identification and characterization of chicken (Gallus gallus) ncRNAs.

Zhang Y, Wang J, Huang S, Zhu X, Liu J, Yang N, Song D, Wu R, Deng W, Skogerbø G, Wang XJ, Chen R, Zhu D.

Nucleic Acids Res. 2009 Oct;37(19):6562-74. doi: 10.1093/nar/gkp704. Epub 2009 Aug 31.

PMID:
19720738
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genomic regions with distinct genomic distance conservation in vertebrate genomes.

Sun H, Skogerbø G, Zheng X, Liu W, Li Y.

BMC Genomics. 2009 Mar 27;10:133. doi: 10.1186/1471-2164-10-133.

PMID:
19323843
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.

Shi B, Guo X, Wu T, Sheng S, Wang J, Skogerbø G, Zhu X, Chen R.

BMC Genomics. 2009 Feb 25;10:92. doi: 10.1186/1471-2164-10-92.

PMID:
19243610
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells.

Tan Y, Zhang B, Wu T, Skogerbø G, Zhu X, Guo X, He S, Chen R.

BMC Mol Biol. 2009 Feb 22;10:12. doi: 10.1186/1471-2199-10-12.

PMID:
19232136
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Structural relationships between highly conserved elements and genes in vertebrate genomes.

Sun H, Skogerbø G, Wang Z, Liu W, Li Y.

PLoS One. 2008;3(11):e3727. doi: 10.1371/journal.pone.0003727. Epub 2008 Nov 14.

PMID:
19008958
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The properties and functions of virus encoded microRNA, siRNA, and other small noncoding RNAs.

He S, Yang Z, Skogerbo G, Ren F, Cui H, Zhao H, Chen R, Zhao Y.

Crit Rev Microbiol. 2008;34(3-4):175-88. doi: 10.1080/10408410802482008 . Review.

PMID:
18972284
[PubMed - indexed for MEDLINE]
17.

Assessing TF regulatory relationships of divergently transcribed genes.

Chen L, Cai L, Skogerbø G, Zhao Y, Chen R.

Genomics. 2008 Nov;92(5):316-21. doi: 10.1016/j.ygeno.2008.07.007. Epub 2008 Sep 16.

PMID:
18755263
[PubMed - indexed for MEDLINE]
Free Article
18.

In vivo analysis of Caenorhabditis elegans noncoding RNA promoter motifs.

Li T, He H, Wang Y, Zheng H, Skogerbø G, Chen R.

BMC Mol Biol. 2008 Aug 5;9:71. doi: 10.1186/1471-2199-9-71.

PMID:
18680611
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Microarray analysis of ncRNA expression patterns in Caenorhabditis elegans after RNAi against snoRNA associated proteins.

Aftab MN, He H, Skogerbø G, Chen R.

BMC Genomics. 2008 Jun 11;9:278. doi: 10.1186/1471-2164-9-278.

PMID:
18547420
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control.

Zhao Y, He S, Liu C, Ru S, Zhao H, Yang Z, Yang P, Yuan X, Sun S, Bu D, Huang J, Skogerbø G, Chen R.

Trends Genet. 2008 Jul;24(7):323-7. doi: 10.1016/j.tig.2008.04.004. Epub 2008 May 29.

PMID:
18514357
[PubMed - indexed for MEDLINE]

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