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Items: 1 to 20 of 36


Computational identification of piRNA targets on mouse mRNAs.

Yuan J, Zhang P, Cui Y, Wang J, Skogerbø G, Huang DW, Chen R, He S.

Bioinformatics. 2016 Apr 15;32(8):1170-7. doi: 10.1093/bioinformatics/btv729. Epub 2015 Dec 16.


Functional diversity of CTCFs is encoded in their binding motifs.

Fang R, Wang C, Skogerbo G, Zhang Z.

BMC Genomics. 2015 Aug 28;16:649. doi: 10.1186/s12864-015-1824-6.


piRBase: a web resource assisting piRNA functional study.

Zhang P, Si X, Skogerbø G, Wang J, Cui D, Li Y, Sun X, Liu L, Sun B, Chen R, He S, Huang DW.

Database (Oxford). 2014 Nov 25;2014:bau110. doi: 10.1093/database/bau110. Print 2014.


Analysis of the p53/CEP-1 regulated non-coding transcriptome in C. elegans by an NSR-seq strategy.

Xu D, Wei G, Lu P, Luo J, Chen X, Skogerbø G, Chen R.

Protein Cell. 2014 Oct;5(10):770-82. doi: 10.1007/s13238-014-0071-y. Epub 2014 May 21.


Evolutionary relationships between miRNA genes and their activity.

Zhu Y, Skogerbø G, Ning Q, Wang Z, Li B, Yang S, Sun H, Li Y.

BMC Genomics. 2012 Dec 22;13:718. doi: 10.1186/1471-2164-13-718.


The human microbiome: a hot spot of microbial horizontal gene transfer.

Liu L, Chen X, Skogerbø G, Zhang P, Chen R, He S, Huang DW.

Genomics. 2012 Nov;100(5):265-70. doi: 10.1016/j.ygeno.2012.07.012. Epub 2012 Jul 25.


Distinct MicroRNA Subcellular Size and Expression Patterns in Human Cancer Cells.

Chen B, Zhang B, Luo H, Yuan J, Skogerbø G, Chen R.

Int J Cell Biol. 2012;2012:672462. doi: 10.1155/2012/672462. Epub 2012 Feb 12.


Integrated sequence-structure motifs suffice to identify microRNA precursors.

Liu X, He S, Skogerbø G, Gong F, Chen R.

PLoS One. 2012;7(3):e32797. doi: 10.1371/journal.pone.0032797. Epub 2012 Mar 15.


A differential sequencing-based analysis of the C. elegans noncoding transcriptome.

Xiao T, Wang Y, Luo H, Liu L, Wei G, Chen X, Sun Y, Chen X, Skogerbø G, Chen R.

RNA. 2012 Apr;18(4):626-39. doi: 10.1261/rna.030965.111. Epub 2012 Feb 16.


NONCODE v3.0: integrative annotation of long noncoding RNAs.

Bu D, Yu K, Sun S, Xie C, Skogerbø G, Miao R, Xiao H, Liao Q, Luo H, Zhao G, Zhao H, Liu Z, Liu C, Chen R, Zhao Y.

Nucleic Acids Res. 2012 Jan;40(Database issue):D210-5. doi: 10.1093/nar/gkr1175. Epub 2011 Dec 1.


ncFANs: a web server for functional annotation of long non-coding RNAs.

Liao Q, Xiao H, Bu D, Xie C, Miao R, Luo H, Zhao G, Yu K, Zhao H, Skogerbø G, Chen R, Wu Z, Liu C, Zhao Y.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W118-24. doi: 10.1093/nar/gkr432.


The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression.

Wang Y, Chen J, Wei G, He H, Zhu X, Xiao T, Yuan J, Dong B, He S, Skogerbø G, Chen R.

Nucleic Acids Res. 2011 Jul;39(12):5203-14. doi: 10.1093/nar/gkr102. Epub 2011 Mar 4.


Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network.

Liao Q, Liu C, Yuan X, Kang S, Miao R, Xiao H, Zhao G, Luo H, Bu D, Zhao H, Skogerbø G, Wu Z, Zhao Y.

Nucleic Acids Res. 2011 May;39(9):3864-78. doi: 10.1093/nar/gkq1348. Epub 2011 Jan 18.


Systematic identification and characterization of chicken (Gallus gallus) ncRNAs.

Zhang Y, Wang J, Huang S, Zhu X, Liu J, Yang N, Song D, Wu R, Deng W, Skogerbø G, Wang XJ, Chen R, Zhu D.

Nucleic Acids Res. 2009 Oct;37(19):6562-74. doi: 10.1093/nar/gkp704. Epub 2009 Aug 31.


Genomic regions with distinct genomic distance conservation in vertebrate genomes.

Sun H, Skogerbø G, Zheng X, Liu W, Li Y.

BMC Genomics. 2009 Mar 27;10:133. doi: 10.1186/1471-2164-10-133.


Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.

Shi B, Guo X, Wu T, Sheng S, Wang J, Skogerbø G, Zhu X, Chen R.

BMC Genomics. 2009 Feb 25;10:92. doi: 10.1186/1471-2164-10-92.


Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells.

Tan Y, Zhang B, Wu T, Skogerbø G, Zhu X, Guo X, He S, Chen R.

BMC Mol Biol. 2009 Feb 22;10:12. doi: 10.1186/1471-2199-10-12.


Structural relationships between highly conserved elements and genes in vertebrate genomes.

Sun H, Skogerbø G, Wang Z, Liu W, Li Y.

PLoS One. 2008;3(11):e3727. doi: 10.1371/journal.pone.0003727. Epub 2008 Nov 14.


The properties and functions of virus encoded microRNA, siRNA, and other small noncoding RNAs.

He S, Yang Z, Skogerbo G, Ren F, Cui H, Zhao H, Chen R, Zhao Y.

Crit Rev Microbiol. 2008;34(3-4):175-88. doi: 10.1080/10408410802482008 . Review.


Assessing TF regulatory relationships of divergently transcribed genes.

Chen L, Cai L, Skogerbø G, Zhao Y, Chen R.

Genomics. 2008 Nov;92(5):316-21. doi: 10.1016/j.ygeno.2008.07.007. Epub 2008 Sep 16.

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