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Results: 13

1.

Conservation of the extended substrate specificity profiles among homologous granzymes across species.

Plasman K, Maurer-Stroh S, Ahmad J, Hao H, Kaiserman D, Sirota FL, Jonckheere V, Bird PI, Gevaert K, Van Damme P.

Mol Cell Proteomics. 2013 Oct;12(10):2921-34. doi: 10.1074/mcp.M113.028670. Epub 2013 Jun 20.

PMID:
23788529
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Beware of moving targets: reference proteome content fluctuates substantially over the years.

Sirota FL, Batagov A, Schneider G, Eisenhaber B, Eisenhaber F, Maurer-Stroh S.

J Bioinform Comput Biol. 2012 Dec;10(6):1250020. doi: 10.1142/S0219720012500205. Epub 2012 Aug 7.

PMID:
22867629
[PubMed - indexed for MEDLINE]
3.

Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.

Tan J, Kuchibhatla D, Sirota FL, Sherman WA, Gattermayer T, Kwoh CY, Eisenhaber F, Schneider G, Maurer-Stroh S.

Bioinformatics. 2012 Jun 15;28(12):1645-6. doi: 10.1093/bioinformatics/bts197. Epub 2012 Apr 23.

PMID:
22531216
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

All that glitters is not gold--founder effects complicate associations of flu mutations to disease severity.

Lee RT, Santos CL, de Paiva TM, Cui L, Sirota FL, Eisenhaber F, Maurer-Stroh S.

Virol J. 2010 Nov 1;7:297. doi: 10.1186/1743-422X-7-297.

PMID:
21040570
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Integrated tools for biomolecular sequence-based function prediction as exemplified by the ANNOTATOR software environment.

Schneider G, Wildpaner M, Sirota FL, Maurer-Stroh S, Eisenhaber B, Eisenhaber F.

Methods Mol Biol. 2010;609:257-67. doi: 10.1007/978-1-60327-241-4_15.

PMID:
20221924
[PubMed - indexed for MEDLINE]
6.

Parameterization of disorder predictors for large-scale applications requiring high specificity by using an extended benchmark dataset.

Sirota FL, Ooi HS, Gattermayer T, Schneider G, Eisenhaber F, Maurer-Stroh S.

BMC Genomics. 2010 Feb 10;11 Suppl 1:S15. doi: 10.1186/1471-2164-11-S1-S15.

PMID:
20158872
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Mapping the sequence mutations of the 2009 H1N1 influenza A virus neuraminidase relative to drug and antibody binding sites.

Maurer-Stroh S, Ma J, Lee RT, Sirota FL, Eisenhaber F.

Biol Direct. 2009 May 20;4:18; discussion 18. doi: 10.1186/1745-6150-4-18.

PMID:
19457254
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

ANNIE: integrated de novo protein sequence annotation.

Ooi HS, Kwo CY, Wildpaner M, Sirota FL, Eisenhaber B, Maurer-Stroh S, Wong WC, Schleiffer A, Eisenhaber F, Schneider G.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W435-40. doi: 10.1093/nar/gkp254. Epub 2009 Apr 23.

PMID:
19389726
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Mechanism and energy landscape of domain swapping in the B1 domain of protein G.

Malevanets A, Sirota FL, Wodak SJ.

J Mol Biol. 2008 Sep 26;382(1):223-35. doi: 10.1016/j.jmb.2008.06.025. Epub 2008 Jun 17.

PMID:
18588900
[PubMed - indexed for MEDLINE]
10.

Role of the amino acid sequence in domain swapping of the B1 domain of protein G.

Sirota FL, Héry-Huynh S, Maurer-Stroh S, Wodak SJ.

Proteins. 2008 Jul;72(1):88-104. doi: 10.1002/prot.21901.

PMID:
18186476
[PubMed - indexed for MEDLINE]
11.

Towards complete sets of farnesylated and geranylgeranylated proteins.

Maurer-Stroh S, Koranda M, Benetka W, Schneider G, Sirota FL, Eisenhaber F.

PLoS Comput Biol. 2007 Apr 6;3(4):e66. Epub 2007 Feb 23.

PMID:
17411337
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

MYRbase: analysis of genome-wide glycine myristoylation enlarges the functional spectrum of eukaryotic myristoylated proteins.

Maurer-Stroh S, Gouda M, Novatchkova M, Schleiffer A, Schneider G, Sirota FL, Wildpaner M, Hayashi N, Eisenhaber F.

Genome Biol. 2004;5(3):R21. Epub 2004 Feb 13.

PMID:
15003124
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Molecular modeling and dynamics of the sodium channel inactivation gate.

Sirota FL, Pascutti PG, Anteneodo C.

Biophys J. 2002 Mar;82(3):1207-15.

PMID:
11867438
[PubMed - indexed for MEDLINE]
Free PMC Article

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