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Items: 18


Exome sequencing reveals frequent deleterious germline variants in cancer susceptibility genes in women with invasive breast cancer undergoing neoadjuvant chemotherapy.

Ellingson MS, Hart SN, Kalari KR, Suman V, Schahl KA, Dockter TJ, Felten SJ, Sinnwell JP, Thompson KJ, Tang X, Vedell PT, Barman P, Sicotte H, Eckel-Passow JE, Northfelt DW, Gray RJ, McLaughlin SA, Moreno-Aspitia A, Ingle JN, Moyer AM, Visscher DW, Jones K, Conners A, McDonough M, Wieben ED, Wang L, Weinshilboum R, Boughey JC, Goetz MP.

Breast Cancer Res Treat. 2015 Sep;153(2):435-43. doi: 10.1007/s10549-015-3545-6. Epub 2015 Aug 22.


The kinship2 R package for pedigree data.

Sinnwell JP, Therneau TM, Schaid DJ.

Hum Hered. 2014;78(2):91-3. doi: 10.1159/000363105. Epub 2014 Jul 29.


Detecting genomic clustering of risk variants from sequence data: cases versus controls.

Schaid DJ, Sinnwell JP, McDonnell SK, Thibodeau SN.

Hum Genet. 2013 Nov;132(11):1301-9. doi: 10.1007/s00439-013-1335-y. Epub 2013 Jul 11.


Multiple genetic variant association testing by collapsing and kernel methods with pedigree or population structured data.

Schaid DJ, McDonnell SK, Sinnwell JP, Thibodeau SN.

Genet Epidemiol. 2013 Jul;37(5):409-18. doi: 10.1002/gepi.21727. Epub 2013 May 5.


Regression modeling of allele frequencies and testing Hardy Weinberg Equilibrium.

Schaid DJ, Sinnwell JP, Jenkins GD.

Hum Hered. 2012;74(2):71-82. doi: 10.1159/000345846. Epub 2013 Jan 11.


Dopamine receptors D1 and D2 are related to observed maternal behavior.

Mileva-Seitz V, Fleming AS, Meaney MJ, Mastroianni A, Sinnwell JP, Steiner M, Atkinson L, Levitan RD, Matthews SG, Kennedy JL, Sokolowski MB.

Genes Brain Behav. 2012 Aug;11(6):684-94. doi: 10.1111/j.1601-183X.2012.00804.x. Epub 2012 Jun 4.


Using the gene ontology to scan multilevel gene sets for associations in genome wide association studies.

Schaid DJ, Sinnwell JP, Jenkins GD, McDonnell SK, Ingle JN, Kubo M, Goss PE, Costantino JP, Wickerham DL, Weinshilboum RM.

Genet Epidemiol. 2012 Jan;36(1):3-16. doi: 10.1002/gepi.20632. Epub 2011 Dec 7.


Application of thrombolytic drugs on clotted blood and bone marrow specimens to generate usable cells for cytogenetic analyses.

St Antoine A, Ketterling MN, Sukov WR, Lowman J, Knudson RA, Sinnwell JP, Wiktor AE, Ketterling RP.

Arch Pathol Lab Med. 2011 Jul;135(7):915-9. doi: 10.1043/2010-0085-OAR1.1.


Development of five dual-color, double-fusion fluorescence in situ hybridization assays for the detection of common MLL translocation partners.

Keefe JG, Sukov WR, Knudson RA, Nguyen LP, Williamson C, Sinnwell JP, Ketterling RP.

J Mol Diagn. 2010 Jul;12(4):441-52. doi: 10.2353/jmoldx.2010.090214. Epub 2010 Jun 10.


Two-stage case-control designs for rare genetic variants.

Schaid DJ, Sinnwell JP.

Hum Genet. 2010 Jun;127(6):659-68. doi: 10.1007/s00439-010-0811-x. Epub 2010 Mar 30.


Single versus multiple imputation for genotypic data.

Fridley BL, McDonnell SK, Rabe KG, Tang R, Biernacka JM, Sinnwell JP, Rider DN, Goode EL.

BMC Proc. 2009 Dec 15;3 Suppl 7:S7.


Identification of genes and haplotypes that predict rheumatoid arthritis using random forests.

Tang R, Sinnwell JP, Li J, Rider DN, de Andrade M, Biernacka JM.

BMC Proc. 2009 Dec 15;3 Suppl 7:S68.


Assessment of genotype imputation methods.

Biernacka JM, Tang R, Li J, McDonnell SK, Rabe KG, Sinnwell JP, Rider DN, de Andrade M, Goode EL, Fridley BL.

BMC Proc. 2009 Dec 15;3 Suppl 7:S5.


Isochromosome 12p and polysomy 12 in primary central nervous system germ cell tumors: frequency and association with clinicopathologic features.

Sukov WR, Cheville JC, Giannini C, Carlson AW, Shearer BM, Sinnwell JP, Ketterling RP.

Hum Pathol. 2010 Feb;41(2):232-8. doi: 10.1016/j.humpath.2009.07.017. Epub 2009 Oct 3.


CCND1 rearrangements and cyclin D1 overexpression in renal oncocytomas: frequency, clinicopathologic features, and utility in differentiation from chromophobe renal cell carcinoma.

Sukov WR, Ketterling RP, Lager DJ, Carlson AW, Sinnwell JP, Chow GK, Jenkins RB, Cheville JC.

Hum Pathol. 2009 Sep;40(9):1296-303. doi: 10.1016/j.humpath.2009.01.016. Epub 2009 Apr 22.


Testing genetic linkage with relative pairs and covariates by quasi-likelihood score statistics.

Schaid DJ, Sinnwell JP, Thibodeau SN.

Hum Hered. 2007;64(4):220-33. Epub 2007 Jun 12.


Utility of ALK-1 protein expression and ALK rearrangements in distinguishing inflammatory myofibroblastic tumor from malignant spindle cell lesions of the urinary bladder.

Sukov WR, Cheville JC, Carlson AW, Shearer BM, Piatigorsky EJ, Grogg KL, Sebo TJ, Sinnwell JP, Ketterling RP.

Mod Pathol. 2007 May;20(5):592-603. Epub 2007 Mar 30.


Robust multipoint identical-by-descent mapping for affected relative pairs.

Schaid DJ, Sinnwell JP, Thibodeau SN.

Am J Hum Genet. 2005 Jan;76(1):128-38. Epub 2004 Nov 30.

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