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Items: 9

1.

Implementation of the Rank-Weighted Co-localization (RWC) algorithm in multiple image analysis platforms for quantitative analysis of microscopy images.

Singan VR, Simpson JC.

Source Code Biol Med. 2016 Feb 16;11:2. doi: 10.1186/s13029-016-0048-8. eCollection 2016.

2.

Correction: Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses.

Schwessinger B, Bahar O, Thomas N, Holton N, Nekrasov V, Ruan D, Canlas PE, Daudi A, Petzold CJ, Singan VR, Kuo R, Chovatia M, Daum C, Heazlewood JL, Zipfel C, Ronald PC.

PLoS Pathog. 2015 Apr 23;11(4):e1004872. doi: 10.1371/journal.ppat.1004872. eCollection 2015 Apr.

3.

Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses.

Schwessinger B, Bahar O, Thomas N, Holton N, Nekrasov V, Ruan D, Canlas PE, Daudi A, Petzold CJ, Singan VR, Kuo R, Chovatia M, Daum C, Heazlewood JL, Zipfel C, Ronald PC.

PLoS Pathog. 2015 Mar 30;11(3):e1004809. doi: 10.1371/journal.ppat.1004809. eCollection 2015 Mar. Erratum in: PLoS Pathog. 2015 Apr;11(4):e1004872. Thomas, Nicolas [corrected to Thomas, Nicholas].

4.

Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells.

Stadler C, Rexhepaj E, Singan VR, Murphy RF, Pepperkok R, Uhlén M, Simpson JC, Lundberg E.

Nat Methods. 2013 Apr;10(4):315-23. doi: 10.1038/nmeth.2377. Epub 2013 Feb 24.

PMID:
23435261
5.

Quantitative image analysis approaches for probing Rab GTPase localization and function in mammalian cells.

Singan VR, Handzic K, Simpson JC.

Biochem Soc Trans. 2012 Dec 1;40(6):1389-93. doi: 10.1042/BST20120145. Review.

PMID:
23176486
6.

A method for improved clustering and classification of microscopy images using quantitative co-localization coefficients.

Singan VR, Handzic K, Curran KM, Simpson JC.

BMC Res Notes. 2012 Jun 8;5:281. doi: 10.1186/1756-0500-5-281.

7.

Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway.

Simpson JC, Joggerst B, Laketa V, Verissimo F, Cetin C, Erfle H, Bexiga MG, Singan VR, Hériché JK, Neumann B, Mateos A, Blake J, Bechtel S, Benes V, Wiemann S, Ellenberg J, Pepperkok R.

Nat Cell Biol. 2012 Jun 3;14(7):764-74. doi: 10.1038/ncb2510.

PMID:
22660414
8.

Dual channel rank-based intensity weighting for quantitative co-localization of microscopy images.

Singan VR, Jones TR, Curran KM, Simpson JC.

BMC Bioinformatics. 2011 Oct 21;12:407. doi: 10.1186/1471-2105-12-407.

9.

wFleaBase: the Daphnia genome database.

Colbourne JK, Singan VR, Gilbert DG.

BMC Bioinformatics. 2005 Mar 7;6:45.

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