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Results: 1 to 20 of 467

1.

A word of caution about biological inference - Revisiting cysteine covalent state predictions.

Tüdős E, Mészáros B, Fiser A, Simon I.

FEBS Open Bio. 2014 Mar 12;4:310-4. doi: 10.1016/j.fob.2014.03.003. eCollection 2014.

PMID:
24918043
[PubMed]
Free PMC Article
2.

Combination of 2D/3D ligand-based similarity search in rapid virtual screening from multimillion compound repositories. Selection and biological evaluation of potential PDE4 and PDE5 inhibitors.

Dobi K, Hajdú I, Flachner B, Fabó G, Szaszkó M, Bognár M, Magyar C, Simon I, Szisz D, Lőrincz Z, Cseh S, Dormán G.

Molecules. 2014 May 28;19(6):7008-39. doi: 10.3390/molecules19067008.

PMID:
24879613
[PubMed - in process]
Free Article
3.

MammaPrint molecular diagnostics on formalin-fixed, paraffin-embedded tissue.

Sapino A, Roepman P, Linn SC, Snel MH, Delahaye LJ, van den Akker J, Glas AM, Simon IM, Barth N, de Snoo FA, van 't Veer LJ, Molinaro L, Berns EM, Wesseling J, Riley LB, Anderson D, Nguyen B, Cox CE.

J Mol Diagn. 2014 Mar;16(2):190-7. doi: 10.1016/j.jmoldx.2013.10.008. Epub 2013 Dec 28.

PMID:
24378251
[PubMed - in process]
4.

Hallmarks of aromatase inhibitor drug resistance revealed by epigenetic profiling in breast cancer.

Jansen MP, Knijnenburg T, Reijm EA, Simon I, Kerkhoven R, Droog M, Velds A, van Laere S, Dirix L, Alexi X, Foekens JA, Wessels L, Linn SC, Berns EM, Zwart W.

Cancer Res. 2013 Nov 15;73(22):6632-41. doi: 10.1158/0008-5472.CAN-13-0704.

PMID:
24242068
[PubMed - indexed for MEDLINE]
5.

TGF-β: an emerging player in drug resistance.

Brunen D, Willems SM, Kellner U, Midgley R, Simon I, Bernards R.

Cell Cycle. 2013 Sep 15;12(18):2960-8. doi: 10.4161/cc.26034. Epub 2013 Aug 12.

PMID:
23974105
[PubMed - indexed for MEDLINE]
6.

Integrative analysis of methylome and transcriptome reveals the importance of unmethylated CpGs in non-CpG island gene activation.

Marx A, Kahan T, Simon I.

Biomed Res Int. 2013;2013:785731. doi: 10.1155/2013/785731. Epub 2013 Jul 10.

PMID:
23936848
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

DUSP 4 expression identifies a subset of colorectal cancer tumors that differ in MAPK activation, regardless of the genotype.

De Vriendt V, De Roock W, Di Narzo AF, Tian S, Biesmans B, Jacobs B, Budinska E, Sagaert X, Rossi S, D'Ario G, Delorenzi M, Simon I, Vecchione L, Tejpar S.

Biomarkers. 2013 Sep;18(6):516-24. doi: 10.3109/1354750X.2013.819038. Epub 2013 Jul 22.

PMID:
23875912
[PubMed - indexed for MEDLINE]
8.

Colorectal cancer intrinsic subtypes predict chemotherapy benefit, deficient mismatch repair and epithelial-to-mesenchymal transition.

Roepman P, Schlicker A, Tabernero J, Majewski I, Tian S, Moreno V, Snel MH, Chresta CM, Rosenberg R, Nitsche U, Macarulla T, Capella G, Salazar R, Orphanides G, Wessels LF, Bernards R, Simon IM.

Int J Cancer. 2014 Feb 1;134(3):552-62. doi: 10.1002/ijc.28387. Epub 2013 Sep 13.

PMID:
23852808
[PubMed - indexed for MEDLINE]
9.

Series of concentration-induced phase transitions in cholesterol/phosphatidylcholine mixtures.

Sugár IP, Simon I, Chong PL.

Biophys J. 2013 Jun 4;104(11):2448-55. doi: 10.1016/j.bpj.2013.04.048.

PMID:
23746517
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Independent validation of a prognostic genomic signature (ColoPrint) for patients with stage II colon cancer.

Maak M, Simon I, Nitsche U, Roepman P, Snel M, Glas AM, Schuster T, Keller G, Zeestraten E, Goossens I, Janssen KP, Friess H, Rosenberg R.

Ann Surg. 2013 Jun;257(6):1053-8. doi: 10.1097/SLA.0b013e31827c1180.

PMID:
23295318
[PubMed - indexed for MEDLINE]
11.

Zinc-α2-glycoprotein is unrelated to gestational diabetes: anthropometric and metabolic determinants in pregnant women and their offspring.

Näf S, Escote X, Yañez RE, Ballesteros M, Simón I, Gil P, Megia A, Vendrell J.

PLoS One. 2012;7(12):e47601. doi: 10.1371/journal.pone.0047601. Epub 2012 Dec 18.

PMID:
23272038
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

PDBTM: Protein Data Bank of transmembrane proteins after 8 years.

Kozma D, Simon I, Tusnády GE.

Nucleic Acids Res. 2013 Jan;41(Database issue):D524-9. doi: 10.1093/nar/gks1169. Epub 2012 Nov 30.

PMID:
23203988
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Sarcoma-like pyogenic granuloma of the thumb and respiratory restrictive syndrome in a non-compliant hemodialysis patient.

Simon I, Gevenois PA, Del Marmol V, El Kazzi W, Trepant AL, Gastaldello K, Nortier JL.

Case Rep Nephrol Urol. 2012 Jul;2(2):152-7. doi: 10.1159/000345281. Epub 2012 Nov 8.

PMID:
23197971
[PubMed]
Free PMC Article
14.

Systematic determination of replication activity type highlights interconnections between replication, chromatin structure and nuclear localization.

Farkash-Amar S, David Y, Polten A, Hezroni H, Eldar YC, Meshorer E, Yakhini Z, Simon I.

PLoS One. 2012;7(11):e48986. doi: 10.1371/journal.pone.0048986. Epub 2012 Nov 7.

PMID:
23145042
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Disordered binding regions and linear motifs--bridging the gap between two models of molecular recognition.

Mészáros B, Dosztányi Z, Simon I.

PLoS One. 2012;7(10):e46829. doi: 10.1371/journal.pone.0046829. Epub 2012 Oct 3.

PMID:
23056474
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genome-wide analysis of androgen receptor targets reveals COUP-TF1 as a novel player in human prostate cancer.

Perets R, Kaplan T, Stein I, Hidas G, Tayeb S, Avraham E, Ben-Neriah Y, Simon I, Pikarsky E.

PLoS One. 2012;7(10):e46467. doi: 10.1371/journal.pone.0046467. Epub 2012 Oct 4.

PMID:
23056316
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A robust genomic signature for the detection of colorectal cancer patients with microsatellite instability phenotype and high mutation frequency.

Tian S, Roepman P, Popovici V, Michaut M, Majewski I, Salazar R, Santos C, Rosenberg R, Nitsche U, Mesker WE, Bruin S, Tejpar S, Delorenzi M, Bernards R, Simon I.

J Pathol. 2012 Aug 27. doi: 10.1002/path.4092. [Epub ahead of print]

PMID:
22926706
[PubMed - as supplied by publisher]
Free PMC Article
18.

Long-term control of vancomycin-resistant Enterococcus faecium at the scale of a large multihospital institution: a seven-year experience.

Fournier S, Brossier F, Fortineau N, Gillaizeau F, Akpabie A, Aubry A, Barbut F, Chedhomme FX, Kassis-Chikhani N, Lucet JC, Robert J, Seytre D, Simon I, Vanjak D, Zahar JR, Brun-Buisson C, Jarlier V.

Euro Surveill. 2012 Jul 26;17(30). pii: 20229.

PMID:
22856512
[PubMed - indexed for MEDLINE]
Free Article
19.

Studying and modelling dynamic biological processes using time-series gene expression data.

Bar-Joseph Z, Gitter A, Simon I.

Nat Rev Genet. 2012 Jul 18;13(8):552-64. doi: 10.1038/nrg3244. Review.

PMID:
22805708
[PubMed - indexed for MEDLINE]
20.

A combined oncogenic pathway signature of BRAF, KRAS and PI3KCA mutation improves colorectal cancer classification and cetuximab treatment prediction.

Tian S, Simon I, Moreno V, Roepman P, Tabernero J, Snel M, van't Veer L, Salazar R, Bernards R, Capella G.

Gut. 2013 Apr;62(4):540-9. doi: 10.1136/gutjnl-2012-302423. Epub 2012 Jul 14.

PMID:
22798500
[PubMed - indexed for MEDLINE]
Free PMC Article

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