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Results: 1 to 20 of 49

1.

Dubious resolution and support from published sparse supermatrices: The importance of thorough tree searches.

Simmons MP, Goloboff PA.

Mol Phylogenet Evol. 2014 Jun 11;78C:334-348. doi: 10.1016/j.ympev.2014.06.002. [Epub ahead of print]

PMID:
24929246
[PubMed - as supplied by publisher]
2.

Disparate parametric branch-support values from ambiguous characters.

Simmons MP, Randle CP.

Mol Phylogenet Evol. 2014 May 10;78C:66-86. doi: 10.1016/j.ympev.2014.04.029. [Epub ahead of print]

PMID:
24821621
[PubMed - as supplied by publisher]
3.

Characterization of selenium and sulfur accumulation across the genus Stanleya (Brassicaceae): A field survey and common-garden experiment.

Cappa JJ, Cappa PJ, El Mehdawi AF, McAleer JM, Simmons MP, Pilon-Smits EA.

Am J Bot. 2014 Apr 21;101(5):830-839. [Epub ahead of print]

PMID:
24752889
[PubMed - as supplied by publisher]
4.

Limitations of locally sampled characters in phylogenetic analyses of sparse supermatrices.

Simmons MP.

Mol Phylogenet Evol. 2014 May;74:1-14. doi: 10.1016/j.ympev.2014.01.030. Epub 2014 Feb 14.

PMID:
24530637
[PubMed - indexed for MEDLINE]
5.

Divergent maximum-likelihood-branch-support values for polytomies.

Simmons MP, Norton AP.

Mol Phylogenet Evol. 2014 Apr;73:87-96. doi: 10.1016/j.ympev.2014.01.018. Epub 2014 Feb 4.

PMID:
24503481
[PubMed - in process]
6.

Image guidance protocols: balancing imaging parameters against scan time.

Bates AM, Scaife JE, Tudor GS, Jena R, Romanchikova M, Dean JC, Hoole AC, Simmons MP, Burnet NG.

Br J Radiol. 2013 Dec;86(1032):20130385. doi: 10.1259/bjr.20130385. Epub 2013 Oct 15.

PMID:
24128423
[PubMed - indexed for MEDLINE]
7.

Geographic and taxonomic disparities in species diversity: dispersal and diversification rates across Wallace's line.

Bacon CD, Michonneau F, Henderson AJ, McKenna MJ, Milroy AM, Simmons MP.

Evolution. 2013 Jul;67(7):2058-71. doi: 10.1111/evo.12084. Epub 2013 Mar 15.

PMID:
23815659
[PubMed - indexed for MEDLINE]
8.

An artifact caused by undersampling optimal trees in supermatrix analyses of locally sampled characters.

Simmons MP, Goloboff PA.

Mol Phylogenet Evol. 2013 Oct;69(1):265-75. doi: 10.1016/j.ympev.2013.06.001. Epub 2013 Jun 10.

PMID:
23764338
[PubMed - indexed for MEDLINE]
9.

Quantification and relative severity of inflated branch-support values generated by alternative methods: an empirical example.

Simmons MP, Norton AP.

Mol Phylogenet Evol. 2013 Apr;67(1):277-96. doi: 10.1016/j.ympev.2013.01.020. Epub 2013 Feb 9.

PMID:
23403225
[PubMed - indexed for MEDLINE]
10.

Phylogeny of the Asian Hedyotis-Oldenlandia complex (Spermacoceae, Rubiaceae): evidence for high levels of polyphyly and the parallel evolution of diplophragmous capsules.

Guo X, Wang RJ, Simmons MP, But PP, Yu J.

Mol Phylogenet Evol. 2013 Apr;67(1):110-22. doi: 10.1016/j.ympev.2013.01.006. Epub 2013 Jan 18.

PMID:
23333437
[PubMed - indexed for MEDLINE]
11.

Rapid intraspecific evolution of miRNA and siRNA genes in the mosquito Aedes aegypti.

Bernhardt SA, Simmons MP, Olson KE, Beaty BJ, Blair CD, Black WC.

PLoS One. 2012;7(9):e44198. doi: 10.1371/journal.pone.0044198. Epub 2012 Sep 21.

PMID:
23028502
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Evaluating multiple criteria for species delimitation: an empirical example using Hawaiian palms (Arecaceae: Pritchardia).

Bacon CD, McKenna MJ, Simmons MP, Wagner WL.

BMC Evol Biol. 2012 Feb 22;12:23. doi: 10.1186/1471-2148-12-23.

PMID:
22353848
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Miocene dispersal drives island radiations in the palm tribe Trachycarpeae (Arecaceae).

Bacon CD, Baker WJ, Simmons MP.

Syst Biol. 2012 May;61(3):426-42. doi: 10.1093/sysbio/syr123. Epub 2012 Jan 5.

PMID:
22223444
[PubMed - indexed for MEDLINE]
14.

Radical instability and spurious branch support by likelihood when applied to matrices with non-random distributions of missing data.

Simmons MP.

Mol Phylogenet Evol. 2012 Jan;62(1):472-84. doi: 10.1016/j.ympev.2011.10.017. Epub 2011 Oct 31.

PMID:
22067131
[PubMed - indexed for MEDLINE]
15.

Phylogeny of Celastraceae tribe Euonymeae inferred from morphological characters and nuclear and plastid genes.

Simmons MP, McKenna MJ, Bacon CD, Yakobson K, Cappa JJ, Archer RH, Ford AJ.

Mol Phylogenet Evol. 2012 Jan;62(1):9-20. doi: 10.1016/j.ympev.2011.08.022. Epub 2011 Aug 30.

PMID:
22001302
[PubMed - indexed for MEDLINE]
16.

Spurious 99% bootstrap and jackknife support for unsupported clades.

Simmons MP, Freudenstein JV.

Mol Phylogenet Evol. 2011 Oct;61(1):177-91. doi: 10.1016/j.ympev.2011.06.003. Epub 2011 Jun 16.

PMID:
21703355
[PubMed - indexed for MEDLINE]
17.

Development of microsatellites in the Hawaiian endemic palm Pritchardia martii (Arecaceae) and their utility in congeners.

Bacon CD, Johnson GP, Meimberg H, Puppo P, Simmons MP, Wagner WL.

Am J Bot. 2011 Jun;98(6):e139-40. doi: 10.3732/ajb.1100073. Epub 2011 May 27.

PMID:
21653501
[PubMed - indexed for MEDLINE]
Free Article
18.

Phylogeny of Celastraceae subfamily Hippocrateoideae inferred from morphological characters and nuclear and plastid loci.

Coughenour JM, Simmons MP, Lombardi JA, Yakobson K, Archer RH.

Mol Phylogenet Evol. 2011 May;59(2):320-30. doi: 10.1016/j.ympev.2011.02.017. Epub 2011 Feb 19.

PMID:
21338700
[PubMed - indexed for MEDLINE]
19.

Molecular analyses of the Chinese herb Leigongteng (Tripterygium wilfordii Hook.f.).

Law SK, Simmons MP, Techen N, Khan IA, He MF, Shaw PC, But PP.

Phytochemistry. 2011 Jan;72(1):21-6. doi: 10.1016/j.phytochem.2010.10.015. Epub 2010 Nov 19.

PMID:
21094504
[PubMed - indexed for MEDLINE]
20.

Alignment of, and phylogenetic inference from, random sequences: the susceptibility of alternative alignment methods to creating artifactual resolution and support.

Simmons MP, Müller KF, Norton AP.

Mol Phylogenet Evol. 2010 Dec;57(3):1004-16. doi: 10.1016/j.ympev.2010.09.004. Epub 2010 Sep 16.

PMID:
20849963
[PubMed - indexed for MEDLINE]

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