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Items: 1 to 20 of 62

1.

Cryptic species diversity reveals biogeographic support for the 'mountain passes are higher in the tropics' hypothesis.

Gill BA, Kondratieff BC, Casner KL, Encalada AC, Flecker AS, Gannon DG, Ghalambor CK, Guayasamin JM, Poff NL, Simmons MP, Thomas SA, Zamudio KR, Funk WC.

Proc Biol Sci. 2016 Jun 15;283(1832). pii: 20160553. doi: 10.1098/rspb.2016.0553.

PMID:
27306051
2.

Biases of tree-independent-character-subsampling methods.

Simmons MP, Gatesy J.

Mol Phylogenet Evol. 2016 Jul;100:424-43. doi: 10.1016/j.ympev.2016.04.022. Epub 2016 Apr 19.

PMID:
27103257
3.

The Complete Plastid Genome of Lagerstroemia fauriei and Loss of rpl2 Intron from Lagerstroemia (Lythraceae).

Gu C, Tembrock LR, Johnson NG, Simmons MP, Wu Z.

PLoS One. 2016 Mar 7;11(3):e0150752. doi: 10.1371/journal.pone.0150752. eCollection 2016.

4.

The effects of subsampling gene trees on coalescent methods applied to ancient divergences.

Simmons MP, Sloan DB, Gatesy J.

Mol Phylogenet Evol. 2016 Apr;97:76-89. doi: 10.1016/j.ympev.2015.12.013. Epub 2016 Jan 6.

PMID:
26768112
5.

Linear Plasmids and the Rate of Sequence Evolution in Plant Mitochondrial Genomes.

Warren JM, Simmons MP, Wu Z, Sloan DB.

Genome Biol Evol. 2016 Jan 11;8(2):364-74. doi: 10.1093/gbe/evw003.

6.

Abundance and Biogeography of Picoprasinophyte Ecotypes and Other Phytoplankton in the Eastern North Pacific Ocean.

Simmons MP, Sudek S, Monier A, Limardo AJ, Jimenez V, Perle CR, Elrod VA, Pennington JT, Worden AZ.

Appl Environ Microbiol. 2016 Jan 4;82(6):1693-705. doi: 10.1128/AEM.02730-15.

7.

Ten Simple Rules for Writing a Reply Paper.

Simmons MP.

PLoS Comput Biol. 2015 Oct 8;11(10):e1004536. doi: 10.1371/journal.pcbi.1004536. eCollection 2015 Oct. No abstract available.

8.

Biogeography of the Malagasy Celastraceae: Multiple independent origins followed by widespread dispersal of genera from Madagascar.

Bacon CD, Simmons MP, Archer RH, Zhao LC, Andriantiana J.

Mol Phylogenet Evol. 2016 Jan;94(Pt A):365-82. doi: 10.1016/j.ympev.2015.09.013. Epub 2015 Sep 30.

PMID:
26432393
9.

Coalescence vs. concatenation: Sophisticated analyses vs. first principles applied to rooting the angiosperms.

Simmons MP, Gatesy J.

Mol Phylogenet Evol. 2015 Oct;91:98-122. doi: 10.1016/j.ympev.2015.05.011. Epub 2015 May 19.

PMID:
26002829
10.

Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and Antarctic Micromonas Populations.

Simmons MP, Bachy C, Sudek S, van Baren MJ, Sudek L, Ares M Jr, Worden AZ.

Mol Biol Evol. 2015 Sep;32(9):2219-35. doi: 10.1093/molbev/msv122. Epub 2015 May 20.

11.

Evolution of selenium hyperaccumulation in Stanleya (Brassicaceae) as inferred from phylogeny, physiology and X-ray microprobe analysis.

Cappa JJ, Yetter C, Fakra S, Cappa PJ, DeTar R, Landes C, Pilon-Smits EA, Simmons MP.

New Phytol. 2015 Jan;205(2):583-95. doi: 10.1111/nph.13071. Epub 2014 Sep 29.

12.

A confounding effect of missing data on character conflict in maximum likelihood and Bayesian MCMC phylogenetic analyses.

Simmons MP.

Mol Phylogenet Evol. 2014 Nov;80:267-80. doi: 10.1016/j.ympev.2014.08.021. Epub 2014 Aug 27.

PMID:
25173567
13.

Bias in tree searches and its consequences for measuring group supports.

Goloboff PA, Simmons MP.

Syst Biol. 2014 Nov;63(6):851-61. doi: 10.1093/sysbio/syu051. Epub 2014 Jul 28.

PMID:
25074580
14.

Dubious resolution and support from published sparse supermatrices: the importance of thorough tree searches.

Simmons MP, Goloboff PA.

Mol Phylogenet Evol. 2014 Sep;78:334-48. doi: 10.1016/j.ympev.2014.06.002. Epub 2014 Jun 11.

PMID:
24929246
15.

Disparate parametric branch-support values from ambiguous characters.

Simmons MP, Randle CP.

Mol Phylogenet Evol. 2014 Sep;78:66-86. doi: 10.1016/j.ympev.2014.04.029. Epub 2014 May 10.

PMID:
24821621
16.

Characterization of selenium and sulfur accumulation across the genus Stanleya (Brassicaceae): A field survey and common-garden experiment.

Cappa JJ, Cappa PJ, El Mehdawi AF, McAleer JM, Simmons MP, Pilon-Smits EA.

Am J Bot. 2014 May;101(5):830-9. doi: 10.3732/ajb.1400041. Epub 2014 Apr 21.

17.

Limitations of locally sampled characters in phylogenetic analyses of sparse supermatrices.

Simmons MP.

Mol Phylogenet Evol. 2014 May;74:1-14. doi: 10.1016/j.ympev.2014.01.030. Epub 2014 Feb 14.

PMID:
24530637
18.

Divergent maximum-likelihood-branch-support values for polytomies.

Simmons MP, Norton AP.

Mol Phylogenet Evol. 2014 Apr;73:87-96. doi: 10.1016/j.ympev.2014.01.018. Epub 2014 Feb 4.

PMID:
24503481
19.

Image guidance protocols: balancing imaging parameters against scan time.

Bates AM, Scaife JE, Tudor GS, Jena R, Romanchikova M, Dean JC, Hoole AC, Simmons MP, Burnet NG.

Br J Radiol. 2013 Dec;86(1032):20130385. doi: 10.1259/bjr.20130385. Epub 2013 Oct 15.

20.

Geographic and taxonomic disparities in species diversity: dispersal and diversification rates across Wallace's line.

Bacon CD, Michonneau F, Henderson AJ, McKenna MJ, Milroy AM, Simmons MP.

Evolution. 2013 Jul;67(7):2058-71. doi: 10.1111/evo.12084. Epub 2013 Mar 15.

PMID:
23815659
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