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Results: 1 to 20 of 195

1.

Draft Genome Sequence of Lactobacillus plantarum CMPG5300, a Human Vaginal Isolate.

Malik S, Siezen RJ, Renckens B, Vaneechoutte M, Vanderleyden J, Lebeer S.

Genome Announc. 2014 Nov 13;2(6). pii: e01149-14. doi: 10.1128/genomeA.01149-14.

2.

Combining chemoinformatics with bioinformatics: in silico prediction of bacterial flavor-forming pathways by a chemical systems biology approach "reverse pathway engineering".

Liu M, Bienfait B, Sacher O, Gasteiger J, Siezen RJ, Nauta A, Geurts JM.

PLoS One. 2014 Jan 8;9(1):e84769. doi: 10.1371/journal.pone.0084769. eCollection 2014.

3.

Safety of the surrogate microorganism Enterococcus faecium NRRL B-2354 for use in thermal process validation.

Kopit LM, Kim EB, Siezen RJ, Harris LJ, Marco ML.

Appl Environ Microbiol. 2014 Mar;80(6):1899-909. doi: 10.1128/AEM.03859-13. Epub 2014 Jan 10.

4.

Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity.

Smokvina T, Wels M, Polka J, Chervaux C, Brisse S, Boekhorst J, van Hylckama Vlieg JE, Siezen RJ.

PLoS One. 2013 Jul 19;8(7):e68731. doi: 10.1371/journal.pone.0068731. Print 2013.

5.

The highly autoaggregative and adhesive phenotype of the vaginal Lactobacillus plantarum strain CMPG5300 is sortase dependent.

Malik S, Petrova MI, Claes IJ, Verhoeven TL, Busschaert P, Vaneechoutte M, Lievens B, Lambrichts I, Siezen RJ, Balzarini J, Vanderleyden J, Lebeer S.

Appl Environ Microbiol. 2013 Aug;79(15):4576-85. doi: 10.1128/AEM.00926-13. Epub 2013 May 24.

6.

Classification of the adenylation and acyl-transferase activity of NRPS and PKS systems using ensembles of substrate specific hidden Markov models.

Khayatt BI, Overmars L, Siezen RJ, Francke C.

PLoS One. 2013 Apr 18;8(4):e62136. doi: 10.1371/journal.pone.0062136. Print 2013.

7.

MGcV: the microbial genomic context viewer for comparative genome analysis.

Overmars L, Kerkhoven R, Siezen RJ, Francke C.

BMC Genomics. 2013 Apr 1;14:209. doi: 10.1186/1471-2164-14-209.

8.

Genotype-phenotype matching analysis of 38 Lactococcus lactis strains using random forest methods.

Bayjanov JR, Starrenburg MJ, van der Sijde MR, Siezen RJ, van Hijum SA.

BMC Microbiol. 2013 Mar 26;13:68. doi: 10.1186/1471-2180-13-68.

9.

Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman.

Anukam KC, Macklaim JM, Gloor GB, Reid G, Boekhorst J, Renckens B, van Hijum SA, Siezen RJ.

PLoS One. 2013;8(3):e59239. doi: 10.1371/journal.pone.0059239. Epub 2013 Mar 19.

10.

Complete Genome Sequence of Anoxybacillus flavithermus TNO-09.006, a Thermophilic Sporeformer Associated with a Dairy-Processing Environment.

Caspers MP, Boekhorst J, Abee T, Siezen RJ, Kort R.

Genome Announc. 2013 Jan;1(1). pii: e00010-13. doi: 10.1128/genomeA.00010-13. Epub 2013 Feb 28.

11.

Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data.

Bryant JM, Schürch AC, van Deutekom H, Harris SR, de Beer JL, de Jager V, Kremer K, van Hijum SA, Siezen RJ, Borgdorff M, Bentley SD, Parkhill J, van Soolingen D.

BMC Infect Dis. 2013 Feb 27;13:110. doi: 10.1186/1471-2334-13-110.

12.

Complete genome sequence of Geobacillus thermoglucosidans TNO-09.020, a thermophilic sporeformer associated with a dairy-processing environment.

Zhao Y, Caspers MP, Abee T, Siezen RJ, Kort R.

J Bacteriol. 2012 Aug;194(15):4118. doi: 10.1128/JB.00318-12.

13.

Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class Bacilli.

Groot Kormelink T, Koenders E, Hagemeijer Y, Overmars L, Siezen RJ, de Vos WM, Francke C.

BMC Genomics. 2012 May 18;13:191. doi: 10.1186/1471-2164-13-191.

14.

PhenoLink--a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains.

Bayjanov JR, Molenaar D, Tzeneva V, Siezen RJ, van Hijum SA.

BMC Genomics. 2012 May 4;13:170. doi: 10.1186/1471-2164-13-170.

15.

Computational analysis of cysteine and methionine metabolism and its regulation in dairy starter and related bacteria.

Liu M, Prakash C, Nauta A, Siezen RJ, Francke C.

J Bacteriol. 2012 Jul;194(13):3522-33. doi: 10.1128/JB.06816-11. Epub 2012 Apr 20.

16.

Genome sequence of the naturally plasmid-free Lactobacillus plantarum strain NC8 (CCUG 61730).

Axelsson L, Rud I, Naterstad K, Blom H, Renckens B, Boekhorst J, Kleerebezem M, van Hijum S, Siezen RJ.

J Bacteriol. 2012 May;194(9):2391-2. doi: 10.1128/JB.00141-12.

17.

SNP/RD typing of Mycobacterium tuberculosis Beijing strains reveals local and worldwide disseminated clonal complexes.

Schürch AC, Kremer K, Hendriks AC, Freyee B, McEvoy CR, van Crevel R, Boeree MJ, van Helden P, Warren RM, Siezen RJ, van Soolingen D.

PLoS One. 2011;6(12):e28365. doi: 10.1371/journal.pone.0028365. Epub 2011 Dec 5.

18.

Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome.

Siezen RJ, Francke C, Renckens B, Boekhorst J, Wels M, Kleerebezem M, van Hijum SA.

J Bacteriol. 2012 Jan;194(1):195-6. doi: 10.1128/JB.06275-11.

19.

Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer.

Siezen RJ, van Hylckama Vlieg JE.

Microb Cell Fact. 2011 Aug 30;10 Suppl 1:S3. doi: 10.1186/1475-2859-10-S1-S3. Epub 2011 Aug 30. Review.

20.

The human gut microbiome: are we our enterotypes?

Siezen RJ, Kleerebezem M.

Microb Biotechnol. 2011 Sep;4(5):550-3. doi: 10.1111/j.1751-7915.2011.00290.x. No abstract available.

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