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Results: 1 to 20 of 96

1.

Prenatal tobacco smoke exposure is associated with childhood DNA CpG methylation.

Breton CV, Siegmund KD, Joubert BR, Wang X, Qui W, Carey V, Nystad W, Håberg SE, Ober C, Nicolae D, Barnes KC, Martinez F, Liu A, Lemanske R, Strunk R, Weiss S, London S, Gilliland F, Raby B; Asthma BRIDGE consortium.

PLoS One. 2014 Jun 25;9(6):e99716. doi: 10.1371/journal.pone.0099716. eCollection 2014.

PMID:
24964093
[PubMed - in process]
Free PMC Article
2.

Non-specific filtering of beta-distributed data.

Wang X, Laird PW, Hinoue T, Groshen S, Siegmund KD.

BMC Bioinformatics. 2014 Jun 19;15(1):199. doi: 10.1186/1471-2105-15-199.

PMID:
24943962
[PubMed - in process]
Free Article
3.

Ancestral inference in tumors: How much can we know?

Zhao J, Siegmund KD, Shibata D, Marjoram P.

J Theor Biol. 2014 Oct 21;359:136-45. doi: 10.1016/j.jtbi.2014.05.027. Epub 2014 Jun 5.

PMID:
24907673
[PubMed - in process]
4.

A panel of three markers hyper- and hypomethylated in urine sediments accurately predicts bladder cancer recurrence.

Su SF, de Castro Abreu AL, Chihara Y, Tsai Y, Andreu-Vieyra C, Daneshmand S, Skinner EC, Jones PA, Siegmund KD, Liang G.

Clin Cancer Res. 2014 Apr 1;20(7):1978-89. doi: 10.1158/1078-0432.CCR-13-2637.

PMID:
24691641
[PubMed - in process]
5.

Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue.

Shi J, Marconett CN, Duan J, Hyland PL, Li P, Wang Z, Wheeler W, Zhou B, Campan M, Lee DS, Huang J, Zhou W, Triche T, Amundadottir L, Warner A, Hutchinson A, Chen PH, Chung BS, Pesatori AC, Consonni D, Bertazzi PA, Bergen AW, Freedman M, Siegmund KD, Berman BP, Borok Z, Chatterjee N, Tucker MA, Caporaso NE, Chanock SJ, Laird-Offringa IA, Landi MT.

Nat Commun. 2014 Feb 27;5:3365. doi: 10.1038/ncomms4365.

PMID:
24572595
[PubMed - in process]
Free PMC Article
6.

Recommendations for the design and analysis of epigenome-wide association studies.

Michels KB, Binder AM, Dedeurwaerder S, Epstein CB, Greally JM, Gut I, Houseman EA, Izzi B, Kelsey KT, Meissner A, Milosavljevic A, Siegmund KD, Bock C, Irizarry RA.

Nat Methods. 2013 Oct;10(10):949-55. doi: 10.1038/nmeth.2632. Review.

PMID:
24076989
[PubMed - indexed for MEDLINE]
7.

Null association between histology of first and second primary malignancies in men with bilateral testicular germ cell tumors.

Thomas JP, Davis-Dao C, Lewinger JP, Siegmund KD, Hamilton AS, Daneshmand S, Skinner EC, Thomas DC, Cortessis VK.

Am J Epidemiol. 2013 Oct 15;178(8):1240-5. doi: 10.1093/aje/kwt100. Epub 2013 Aug 8.

PMID:
23928263
[PubMed - indexed for MEDLINE]
8.

Integrated transcriptomic and epigenomic analysis of primary human lung epithelial cell differentiation.

Marconett CN, Zhou B, Rieger ME, Selamat SA, Dubourd M, Fang X, Lynch SK, Stueve TR, Siegmund KD, Berman BP, Borok Z, Laird-Offringa IA.

PLoS Genet. 2013 Jun;9(6):e1003513. doi: 10.1371/journal.pgen.1003513. Epub 2013 Jun 20.

PMID:
23818859
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Low-level processing of Illumina Infinium DNA Methylation BeadArrays.

Triche TJ Jr, Weisenberger DJ, Van Den Berg D, Laird PW, Siegmund KD.

Nucleic Acids Res. 2013 Apr;41(7):e90. doi: 10.1093/nar/gkt090. Epub 2013 Mar 9.

PMID:
23476028
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Testicular germ cell tumor susceptibility associated with the UCK2 locus on chromosome 1q23.

Schumacher FR, Wang Z, Skotheim RI, Koster R, Chung CC, Hildebrandt MA, Kratz CP, Bakken AC, Bishop DT, Cook MB, Erickson RL, Fosså SD, Greene MH, Jacobs KB, Kanetsky PA, Kolonel LN, Loud JT, Korde LA, Le Marchand L, Lewinger JP, Lothe RA, Pike MC, Rahman N, Rubertone MV, Schwartz SM, Siegmund KD, Skinner EC, Turnbull C, Van Den Berg DJ, Wu X, Yeager M, Nathanson KL, Chanock SJ, Cortessis VK, McGlynn KA.

Hum Mol Genet. 2013 Jul 1;22(13):2748-53. doi: 10.1093/hmg/ddt109. Epub 2013 Mar 5.

PMID:
23462292
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

G9a functions as a molecular scaffold for assembly of transcriptional coactivators on a subset of glucocorticoid receptor target genes.

Bittencourt D, Wu DY, Jeong KW, Gerke DS, Herviou L, Ianculescu I, Chodankar R, Siegmund KD, Stallcup MR.

Proc Natl Acad Sci U S A. 2012 Nov 27;109(48):19673-8. doi: 10.1073/pnas.1211803109. Epub 2012 Nov 14.

PMID:
23151507
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data.

Liu Y, Siegmund KD, Laird PW, Berman BP.

Genome Biol. 2012 Jul 11;13(7):R61. doi: 10.1186/gb-2012-13-7-r61.

PMID:
22784381
[PubMed - in process]
Free PMC Article
13.

Environmental epigenetics: prospects for studying epigenetic mediation of exposure-response relationships.

Cortessis VK, Thomas DC, Levine AJ, Breton CV, Mack TM, Siegmund KD, Haile RW, Laird PW.

Hum Genet. 2012 Oct;131(10):1565-89. doi: 10.1007/s00439-012-1189-8. Epub 2012 Jun 28. Review.

PMID:
22740325
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression.

Selamat SA, Chung BS, Girard L, Zhang W, Zhang Y, Campan M, Siegmund KD, Koss MN, Hagen JA, Lam WL, Lam S, Gazdar AF, Laird-Offringa IA.

Genome Res. 2012 Jul;22(7):1197-211. doi: 10.1101/gr.132662.111. Epub 2012 May 21.

PMID:
22613842
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Particulate matter, DNA methylation in nitric oxide synthase, and childhood respiratory disease.

Breton CV, Salam MT, Wang X, Byun HM, Siegmund KD, Gilliland FD.

Environ Health Perspect. 2012 Sep;120(9):1320-6. doi: 10.1289/ehp.1104439. Epub 2012 May 16.

PMID:
22591701
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Selective roles for cAMP response element-binding protein binding protein and p300 protein as coregulators for androgen-regulated gene expression in advanced prostate cancer cells.

Ianculescu I, Wu DY, Siegmund KD, Stallcup MR.

J Biol Chem. 2012 Feb 3;287(6):4000-13. doi: 10.1074/jbc.M111.300194. Epub 2011 Dec 15. Erratum in: J Biol Chem. 2012 Oct 19;287(43):35985.

PMID:
22174411
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genome-scale screen for DNA methylation-based detection markers for ovarian cancer.

Campan M, Moffitt M, Houshdaran S, Shen H, Widschwendter M, Daxenbichler G, Long T, Marth C, Laird-Offringa IA, Press MF, Dubeau L, Siegmund KD, Wu AH, Groshen S, Chandavarkar U, Roman LD, Berchuck A, Pearce CL, Laird PW.

PLoS One. 2011;6(12):e28141. doi: 10.1371/journal.pone.0028141. Epub 2011 Dec 7.

PMID:
22163280
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Epigenetic subgroups of esophageal and gastric adenocarcinoma with differential GATA5 DNA methylation associated with clinical and lifestyle factors.

Wang X, Kang GH, Campan M, Weisenberger DJ, Long TI, Cozen W, Bernstein L, Wu AH, Siegmund KD, Shibata D, Laird PW.

PLoS One. 2011;6(10):e25985. doi: 10.1371/journal.pone.0025985. Epub 2011 Oct 20.

PMID:
22028801
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Modeling measurement error in tumor characterization studies.

Rakovski C, Weisenberger DJ, Marjoram P, Laird PW, Siegmund KD.

BMC Bioinformatics. 2011 Jul 13;12:284. doi: 10.1186/1471-2105-12-284.

PMID:
21752297
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

High DNA methylation pattern intratumoral diversity implies weak selection in many human colorectal cancers.

Siegmund KD, Marjoram P, Tavaré S, Shibata D.

PLoS One. 2011;6(6):e21657. doi: 10.1371/journal.pone.0021657. Epub 2011 Jun 28.

PMID:
21738754
[PubMed - indexed for MEDLINE]
Free PMC Article

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