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Practicability of detecting somatic point mutation from RNA high throughput sequencing data.

Sheng Q, Zhao S, Li CI, Shyr Y, Guo Y.

Genomics. 2016 Apr 2. pii: S0888-7543(16)30021-0. doi: 10.1016/j.ygeno.2016.03.006. [Epub ahead of print]


Comparison of Modified Blumgart pancreaticojejunostomy and pancreaticogastrostomy after pancreaticoduodenectomy.

Wang SE, Chen SC, Shyr BU, Shyr YM.

HPB (Oxford). 2016 Mar;18(3):229-35. doi: 10.1016/j.hpb.2015.09.007. Epub 2015 Nov 17.


Effects of combination PPARĪ³ agonist and angiotensin receptor blocker on glomerulosclerosis.

Matsushita K, Yang HC, Mysore MM, Zhong J, Shyr Y, Ma LJ, Fogo AB.

Lab Invest. 2016 Mar 21. doi: 10.1038/labinvest.2016.42. [Epub ahead of print]


Mitochondria single nucleotide variation across six blood cell types.

Zhang P, Samuels DC, Wang J, Zhao S, Shyr Y, Guo Y.

Mitochondrion. 2016 Mar 5;28:16-22. doi: 10.1016/j.mito.2016.03.001. [Epub ahead of print]


p73 Is Required for Multiciliogenesis and Regulates the Foxj1-Associated Gene Network.

Marshall CB, Mays DJ, Beeler JS, Rosenbluth JM, Boyd KL, Santos Guasch GL, Shaver TM, Tang LJ, Liu Q, Shyr Y, Venters BJ, Magnuson MA, Pietenpol JA.

Cell Rep. 2016 Mar 15;14(10):2289-300. doi: 10.1016/j.celrep.2016.02.035. Epub 2016 Mar 3.


Non-invasive imaging of oxygen extraction fraction in adults with sickle cell anaemia.

Jordan LC, Gindville MC, Scott AO, Juttukonda MR, Strother MK, Kassim AA, Chen SC, Lu H, Pruthi S, Shyr Y, Donahue MJ.

Brain. 2016 Mar;139(Pt 3):738-50. doi: 10.1093/brain/awv397. Epub 2016 Jan 27.


Melanoma-specific MHC-II expression represents a tumour-autonomous phenotype and predicts response to anti-PD-1/PD-L1 therapy.

Johnson DB, Estrada MV, Salgado R, Sanchez V, Doxie DB, Opalenik SR, Vilgelm AE, Feld E, Johnson AS, Greenplate AR, Sanders ME, Lovly CM, Frederick DT, Kelley MC, Richmond A, Irish JM, Shyr Y, Sullivan RJ, Puzanov I, Sosman JA, Balko JM.

Nat Commun. 2016 Jan 29;7:10582. doi: 10.1038/ncomms10582.


Clinical significance of circulating plasma DNA in gastric cancer.

Fang WL, Lan YT, Huang KH, Liu CA, Hung YP, Lin CH, Jhang FY, Chang SC, Chen MH, Chao Y, Lin WC, Lo SS, Fen-Yau Li A, Wu CW, Chiou SH, Shyr YM.

Int J Cancer. 2016 Jun 15;138(12):2974-83. doi: 10.1002/ijc.30018. Epub 2016 Feb 18.


Prognostic factors of primary resected retroperitoneal soft tissue sarcoma: Analysis from a single asian tertiary center and external validation of gronchi's nomogram.

Chou YS, Liu CY, Chang YH, King KL, Chen PC, Pan CC, Shen SH, Liu YM, Lin AT, Chen KK, Shyr YM, Lee RC, Chao TC, Yang MH, Chan CH, You JY, Yen CC.

J Surg Oncol. 2016 Mar;113(4):355-60. doi: 10.1002/jso.24155. Epub 2016 Jan 8.


Connecting the Dots: Therapy-Induced Senescence and a Tumor-Suppressive Immune Microenvironment.

Vilgelm AE, Johnson CA, Prasad N, Yang J, Chen SC, Ayers GD, Pawlikowski JS, Raman D, Sosman JA, Kelley M, Ecsedy JA, Shyr Y, Levy SE, Richmond A.

J Natl Cancer Inst. 2015 Dec 30;108(6). pii: djv406. doi: 10.1093/jnci/djv406. Print 2016 Jun.


Mutations in PI3K/AKT pathway genes and amplifications of PIK3CA are associated with patterns of recurrence in gastric cancers.

Fang WL, Huang KH, Lan YT, Lin CH, Chang SC, Chen MH, Chao Y, Lin WC, Lo SS, Li AF, Wu CW, Chiou SH, Shyr YM.

Oncotarget. 2016 Feb 2;7(5):6201-20. doi: 10.18632/oncotarget.6641.


Incidence of and Risk Factors for Tuberculosis (TB) in Gastric Cancer Patients in an Area Endemic for TB: A Nationwide Population-based Matched Cohort Study.

Fang WL, Hung YP, Liu CJ, Lan YT, Huang KH, Chen MH, Lo SS, Shyr YM, Wu CW, Yang MH, Chen TJ, Chao Y.

Medicine (Baltimore). 2015 Nov;94(47):e2163. doi: 10.1097/MD.0000000000002163.


RNAseq by Total RNA Library Identifies Additional RNAs Compared to Poly(A) RNA Library.

Guo Y, Zhao S, Sheng Q, Guo M, Lehmann B, Pietenpol J, Samuels DC, Shyr Y.

Biomed Res Int. 2015;2015:862130. doi: 10.1155/2015/862130. Epub 2015 Oct 12.


Assessing Computational Steps for CLIP-Seq Data Analysis.

Liu Q, Zhong X, Madison BB, Rustgi AK, Shyr Y.

Biomed Res Int. 2015;2015:196082. doi: 10.1155/2015/196082. Epub 2015 Oct 11.


Clinicopathological Variation of Lauren Classification in Gastric Cancer.

Chen YC, Fang WL, Wang RF, Liu CA, Yang MH, Lo SS, Wu CW, Li AF, Shyr YM, Huang KH.

Pathol Oncol Res. 2016 Jan;22(1):197-202. doi: 10.1007/s12253-015-9996-6. Epub 2015 Oct 27.


Molecular characteristics of recurrent triple-negative breast cancer.

Tsai CH, Chiu JH, Yang CW, Wang JY, Tsai YF, Tseng LM, Chen WS, Shyr YM.

Mol Med Rep. 2015 Nov;12(5):7326-34. doi: 10.3892/mmr.2015.4360. Epub 2015 Sep 24.


A Nation-Wide Cancer Registry-Based Study of Adenosquamous Carcinoma in Taiwan.

Lan YT, Huang KH, Liu CA, Tai LC, Chen MH, Chao Y, Li AF, Chiou SH, Shyr YM, Wu CW, Fang WL.

PLoS One. 2015 Oct 7;10(10):e0139748. doi: 10.1371/journal.pone.0139748. eCollection 2015.


Acute Viral Respiratory Infection Rapidly Induces a CD8+ T Cell Exhaustion-like Phenotype.

Erickson JJ, Lu P, Wen S, Hastings AK, Gilchuk P, Joyce S, Shyr Y, Williams JV.

J Immunol. 2015 Nov 1;195(9):4319-30. doi: 10.4049/jimmunol.1403004. Epub 2015 Sep 23.


Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data.

Tu C, Sheng Q, Li J, Ma D, Shen X, Wang X, Shyr Y, Yi Z, Qu J.

J Proteome Res. 2015 Nov 6;14(11):4662-73. doi: 10.1021/acs.jproteome.5b00536. Epub 2015 Sep 30.


Pyruvate Kinase Muscle Isoenzyme 2 (PKM2) Expression Is Associated with Overall Survival in Pancreatic Ductal Adenocarcinoma.

Lockney NA, Zhang M, Lu Y, Sopha SC, Washington MK, Merchant N, Zhao Z, Shyr Y, Chakravarthy AB, Xia F.

J Gastrointest Cancer. 2015 Dec;46(4):390-8. doi: 10.1007/s12029-015-9764-6.

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