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Results: 1 to 20 of 50

1.

The radish genome and comprehensive gene expression profile of tuberous root formation and development.

Mitsui Y, Shimomura M, Komatsu K, Namiki N, Shibata-Hatta M, Imai M, Katayose Y, Mukai Y, Kanamori H, Kurita K, Kagami T, Wakatsuki A, Ohyanagi H, Ikawa H, Minaka N, Nakagawa K, Shiwa Y, Sasaki T.

Sci Rep. 2015 Jun 9;5:10835. doi: 10.1038/srep10835.

2.

Microevolution of Virulence-Related Genes in Helicobacter pylori Familial Infection.

Furuta Y, Konno M, Osaki T, Yonezawa H, Ishige T, Imai M, Shiwa Y, Shibata-Hatta M, Kanesaki Y, Yoshikawa H, Kamiya S, Kobayashi I.

PLoS One. 2015 May 15;10(5):e0127197. doi: 10.1371/journal.pone.0127197. eCollection 2015.

3.

Genome Sequences of Three Strains of Lactobacillus paracasei of Different Origins and with Different Cholate Sensitivities.

Shiwa Y, Atarashi H, Tanaka N, Okada S, Yoshikawa H, Endo A, Miyaji T, Nakagawa J.

Genome Announc. 2015 Apr 30;3(2). pii: e00178-15. doi: 10.1128/genomeA.00178-15.

4.

Strigolactone regulates anthocyanin accumulation, acid phosphatases production and plant growth under low phosphate condition in Arabidopsis.

Ito S, Nozoye T, Sasaki E, Imai M, Shiwa Y, Shibata-Hatta M, Ishige T, Fukui K, Ito K, Nakanishi H, Nishizawa NK, Yajima S, Asami T.

PLoS One. 2015 Mar 20;10(3):e0119724. doi: 10.1371/journal.pone.0119724. eCollection 2015.

5.

A novel subpopulation of Salmonella enterica serovar Infantis strains isolated from broiler chicken organs other than the gastrointestinal tract.

Yokoyama E, Ando N, Ohta T, Kanada A, Shiwa Y, Ishige T, Murakami K, Kikuchi T, Murakami S.

Vet Microbiol. 2015 Feb 25;175(2-4):312-8. doi: 10.1016/j.vetmic.2014.11.024. Epub 2014 Dec 4.

PMID:
25542287
6.

Complete Genome Sequence of Bifidobacterium longum 105-A, a Strain with High Transformation Efficiency.

Kanesaki Y, Masutani H, Sakanaka M, Shiwa Y, Fujisawa T, Nakamura Y, Yokota A, Fukiya S, Suzuki T, Yoshikawa H.

Genome Announc. 2014 Dec 18;2(6). pii: e01311-14. doi: 10.1128/genomeA.01311-14.

7.

Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo.

Nakahigashi K, Takai Y, Shiwa Y, Wada M, Honma M, Yoshikawa H, Tomita M, Kanai A, Mori H.

BMC Genomics. 2014 Dec 16;15:1115. doi: 10.1186/1471-2164-15-1115.

8.

The tap-tpg gene pair on the linear plasmid functions to maintain a linear topology of the chromosome in Streptomyces rochei.

Nindita Y, Cao Z, Yang Y, Arakawa K, Shiwa Y, Yoshikawa H, Tagami M, Lezhava A, Kinashi H.

Mol Microbiol. 2015 Mar;95(5):846-58. doi: 10.1111/mmi.12904. Epub 2015 Jan 24.

PMID:
25495952
9.

Draft Genome Sequence of the Versatile Alkane-Degrading Bacterium Aquabacterium sp. Strain NJ1.

Masuda H, Shiwa Y, Yoshikawa H, Zylstra GJ.

Genome Announc. 2014 Dec 4;2(6). pii: e01271-14. doi: 10.1128/genomeA.01271-14.

10.

Bacillus subtilis degSU operon is regulated by the ClpXP-Spx regulated proteolysis system.

Shiwa Y, Yoshikawa H, Tanaka T, Ogura M.

J Biochem. 2015 May;157(5):321-30. doi: 10.1093/jb/mvu076. Epub 2014 Nov 29.

PMID:
25433860
11.

Both HMG boxes in Hmo1 are essential for DNA binding in vitro and in vivo.

Higashino A, Shiwa Y, Yoshikawa H, Kokubo T, Kasahara K.

Biosci Biotechnol Biochem. 2015;79(3):384-93. doi: 10.1080/09168451.2014.978258. Epub 2014 Nov 20.

PMID:
25410521
12.

Defect in the formation of 70S ribosomes caused by lack of ribosomal protein L34 can be suppressed by magnesium.

Akanuma G, Kobayashi A, Suzuki S, Kawamura F, Shiwa Y, Watanabe S, Yoshikawa H, Hanai R, Ishizuka M.

J Bacteriol. 2014 Nov;196(22):3820-30. doi: 10.1128/JB.01896-14. Epub 2014 Sep 2.

13.

Reduction of systematic bias in transcriptome data from human peripheral blood mononuclear cells for transportation and biobanking.

Ohmomo H, Hachiya T, Shiwa Y, Furukawa R, Ono K, Ito S, Ishida Y, Satoh M, Hitomi J, Sobue K, Shimizu A.

PLoS One. 2014 Aug 7;9(8):e104283. doi: 10.1371/journal.pone.0104283. eCollection 2014.

14.

Cell motility and biofilm formation in Bacillus subtilis are affected by the ribosomal proteins, S11 and S21.

Takada H, Morita M, Shiwa Y, Sugimoto R, Suzuki S, Kawamura F, Yoshikawa H.

Biosci Biotechnol Biochem. 2014;78(5):898-907. doi: 10.1080/09168451.2014.915729. Epub 2014 May 28.

PMID:
25035996
15.

Phylogenetic and population genetic analysis of Salmonella enterica subsp. enterica serovar Infantis strains isolated in Japan using whole genome sequence data.

Yokoyama E, Murakami K, Shiwa Y, Ishige T, Ando N, Kikuchi T, Murakami S.

Infect Genet Evol. 2014 Oct;27:62-8. doi: 10.1016/j.meegid.2014.06.012. Epub 2014 Jul 3.

PMID:
24999237
16.

Complete genome sequence of Enterococcus mundtii QU 25, an efficient L-(+)-lactic acid-producing bacterium.

Shiwa Y, Yanase H, Hirose Y, Satomi S, Araya-Kojima T, Watanabe S, Zendo T, Chibazakura T, Shimizu-Kadota M, Yoshikawa H, Sonomoto K.

DNA Res. 2014 Aug;21(4):369-77. doi: 10.1093/dnares/dsu003. Epub 2014 Feb 24.

17.

Genome-wide DNA polymorphisms in seven rice cultivars of temperate and tropical japonica groups.

Arai-Kichise Y, Shiwa Y, Ebana K, Shibata-Hatta M, Yoshikawa H, Yano M, Wakasa K.

PLoS One. 2014 Jan 21;9(1):e86312. doi: 10.1371/journal.pone.0086312. eCollection 2014.

18.

Adaptive response of Amphibacillus xylanus to normal aerobic and forced oxidative stress conditions.

Mochizuki D, Arai T, Asano M, Sasakura N, Watanabe T, Shiwa Y, Nakamura S, Katano Y, Fujinami S, Fujita N, Abe A, Sato J, Nakagawa J, Niimura Y.

Microbiology. 2014 Feb;160(Pt 2):340-52. doi: 10.1099/mic.0.068726-0. Epub 2013 Dec 4.

PMID:
24307665
19.

Identification of laboratory-specific variations of Bacillus subtilis strains used in Japan.

Shiwa Y, Matsumoto T, Yoshikawa H.

Biosci Biotechnol Biochem. 2013;77(10):2073-6. Epub 2013 Oct 7.

20.

Genomic features of Lactococcus lactis IO-1, a lactic acid bacterium that utilizes xylose and produces high levels of L-lactic acid.

Shimizu-Kadota M, Kato H, Shiwa Y, Oshima K, Machii M, Araya-Kojima T, Zendo T, Hattori M, Sonomoto K, Yoshikawa H.

Biosci Biotechnol Biochem. 2013;77(9):1804-8. Epub 2013 Sep 7.

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