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Results: 1 to 20 of 110

1.

Experimental Evolution: Prospects and Challenges.

Rosenzweig F, Sherlock G.

Genomics. 2014 Dec;104(6PA):v-vi. doi: 10.1016/j.ygeno.2014.11.008. No abstract available.

PMID:
25496938
[PubMed - as supplied by publisher]
2.

The Valley-of-Death: Reciprocal sign epistasis constrains adaptive trajectories in a constant, nutrient limiting environment.

Chiotti KE, Kvitek DJ, Schmidt KH, Koniges G, Schwartz K, Donckels EA, Rosenzweig F, Sherlock G.

Genomics. 2014 Dec;104(6PA):431-437. doi: 10.1016/j.ygeno.2014.10.011. Epub 2014 Nov 1.

PMID:
25449178
[PubMed - as supplied by publisher]
3.

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.

Hu JC, Sherlock G, Siegele DA, Aleksander SA, Ball CA, Demeter J, Gouni S, Holland TA, Karp PD, Lewis JE, Liles NM, McIntosh BK, Mi H, Muruganujan A, Wymore F, Thomas PD.

Nucleic Acids Res. 2014 Oct 29;42(19):12330. doi: 10.1093/nar/gku902. Epub 2014 Oct 11. No abstract available.

PMID:
25306417
[PubMed - in process]
Free PMC Article
4.

Ex uno plures: clonal reinforcement drives evolution of a simple microbial community.

Kinnersley M, Wenger J, Kroll E, Adams J, Sherlock G, Rosenzweig F.

PLoS Genet. 2014 Jun 26;10(6):e1004430. doi: 10.1371/journal.pgen.1004430. eCollection 2014 Jun.

PMID:
24968217
[PubMed - in process]
Free PMC Article
5.

Curation accuracy of model organism databases.

Keseler IM, Skrzypek M, Weerasinghe D, Chen AY, Fulcher C, Li GW, Lemmer KC, Mladinich KM, Chow ED, Sherlock G, Karp PD.

Database (Oxford). 2014 Jun 12;2014. pii: bau058. doi: 10.1093/database/bau058. Print 2014.

PMID:
24923819
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Literature-based gene curation and proposed genetic nomenclature for cryptococcus.

Inglis DO, Skrzypek MS, Liaw E, Moktali V, Sherlock G, Stajich JE.

Eukaryot Cell. 2014 Jul;13(7):878-83. doi: 10.1128/EC.00083-14. Epub 2014 May 9.

PMID:
24813190
[PubMed - in process]
Free PMC Article
7.

Extensive and coordinated control of allele-specific expression by both transcription and translation in Candida albicans.

Muzzey D, Sherlock G, Weissman JS.

Genome Res. 2014 Jun;24(6):963-73. doi: 10.1101/gr.166322.113. Epub 2014 Apr 14.

PMID:
24732588
[PubMed - in process]
Free PMC Article
8.

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.

Hu JC, Sherlock G, Siegele DA, Aleksander SA, Ball CA, Demeter J, Gouni S, Holland TA, Karp PD, Lewis JE, Liles NM, McIntosh BK, Mi H, Muruganujan A, Wymore F, Thomas PD.

Nucleic Acids Res. 2014 Jan;42(Database issue):D677-84. doi: 10.1093/nar/gkt1203. Epub 2013 Nov 26.

PMID:
24285306
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment.

Kvitek DJ, Sherlock G.

PLoS Genet. 2013 Nov;9(11):e1003972. doi: 10.1371/journal.pgen.1003972. Epub 2013 Nov 21.

PMID:
24278038
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.

Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR.

Nucleic Acids Res. 2014 Jan;42(Database issue):D705-10. doi: 10.1093/nar/gkt1029. Epub 2013 Nov 4.

PMID:
24194595
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny.

Binkley J, Arnaud MB, Inglis DO, Skrzypek MS, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G.

Nucleic Acids Res. 2014 Jan;42(Database issue):D711-6. doi: 10.1093/nar/gkt1046. Epub 2013 Oct 31.

PMID:
24185697
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Phenotypic and genotypic convergences are influenced by historical contingency and environment in yeast.

Spor A, Kvitek DJ, Nidelet T, Martin J, Legrand J, Dillmann C, Bourgais A, de Vienne D, Sherlock G, Sicard D.

Evolution. 2014 Mar;68(3):772-90. doi: 10.1111/evo.12302. Epub 2013 Nov 25.

PMID:
24164389
[PubMed - indexed for MEDLINE]
13.

Identification of cell cycle-regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors.

Grant GD, Brooks L 3rd, Zhang X, Mahoney JM, Martyanov V, Wood TA, Sherlock G, Cheng C, Whitfield ML.

Mol Biol Cell. 2013 Dec;24(23):3634-50. doi: 10.1091/mbc.E13-05-0264. Epub 2013 Oct 9.

PMID:
24109597
[PubMed - indexed for MEDLINE]
Free PMC Article
14.
15.

Ras signaling gets fine-tuned: regulation of multiple pathogenic traits of Candida albicans.

Inglis DO, Sherlock G.

Eukaryot Cell. 2013 Oct;12(10):1316-25. doi: 10.1128/EC.00094-13. Epub 2013 Aug 2. Review.

PMID:
23913542
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae.

Inglis DO, Binkley J, Skrzypek MS, Arnaud MB, Cerqueira GC, Shah P, Wymore F, Wortman JR, Sherlock G.

BMC Microbiol. 2013 Apr 26;13:91. doi: 10.1186/1471-2180-13-91.

PMID:
23617571
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression.

Dunn B, Paulish T, Stanbery A, Piotrowski J, Koniges G, Kroll E, Louis EJ, Liti G, Sherlock G, Rosenzweig F.

PLoS Genet. 2013 Mar;9(3):e1003366. doi: 10.1371/journal.pgen.1003366. Epub 2013 Mar 21.

PMID:
23555283
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comparative metabolic footprinting of a large number of commercial wine yeast strains in Chardonnay fermentations.

Richter CL, Dunn B, Sherlock G, Pugh T.

FEMS Yeast Res. 2013 Jun;13(4):394-410. doi: 10.1111/1567-1364.12046. Epub 2013 Apr 12.

PMID:
23528123
[PubMed - indexed for MEDLINE]
19.

Improved gene ontology annotation for biofilm formation, filamentous growth, and phenotypic switching in Candida albicans.

Inglis DO, Skrzypek MS, Arnaud MB, Binkley J, Shah P, Wymore F, Sherlock G.

Eukaryot Cell. 2013 Jan;12(1):101-8. doi: 10.1128/EC.00238-12. Epub 2012 Nov 9.

PMID:
23143685
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve.

Piotrowski JS, Nagarajan S, Kroll E, Stanbery A, Chiotti KE, Kruckeberg AL, Dunn B, Sherlock G, Rosenzweig F.

BMC Evol Biol. 2012 Apr 2;12:46. doi: 10.1186/1471-2148-12-46.

PMID:
22471618
[PubMed - indexed for MEDLINE]
Free PMC Article

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