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Items: 1 to 20 of 25

1.

Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates.

Wen J, Ladewig E, Shenker S, Mohammed J, Lai EC.

PLoS Comput Biol. 2015 Sep 1;11(9):e1004441. doi: 10.1371/journal.pcbi.1004441. eCollection 2015 Sep.

2.

Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation.

Westholm JO, Miura P, Olson S, Shenker S, Joseph B, Sanfilippo P, Celniker SE, Graveley BR, Lai EC.

Cell Rep. 2014 Dec 11;9(5):1966-80. doi: 10.1016/j.celrep.2014.10.062. Epub 2014 Nov 26.

3.

IsoSCM: improved and alternative 3' UTR annotation using multiple change-point inference.

Shenker S, Miura P, Sanfilippo P, Lai EC.

RNA. 2015 Jan;21(1):14-27. doi: 10.1261/rna.046037.114. Epub 2014 Nov 18.

4.

Alternative polyadenylation in the nervous system: to what lengths will 3' UTR extensions take us?

Miura P, Sanfilippo P, Shenker S, Lai EC.

Bioessays. 2014 Aug;36(8):766-77. doi: 10.1002/bies.201300174. Epub 2014 Jun 5. Review.

5.

Diversity and dynamics of the Drosophila transcriptome.

Brown JB, Boley N, Eisman R, May GE, Stoiber MH, Duff MO, Booth BW, Wen J, Park S, Suzuki AM, Wan KH, Yu C, Zhang D, Carlson JW, Cherbas L, Eads BD, Miller D, Mockaitis K, Roberts J, Davis CA, Frise E, Hammonds AS, Olson S, Shenker S, Sturgill D, Samsonova AA, Weiszmann R, Robinson G, Hernandez J, Andrews J, Bickel PJ, Carninci P, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Lai EC, Oliver B, Perrimon N, Graveley BR, Celniker SE.

Nature. 2014 Aug 28;512(7515):393-9.

6.

Widespread and extensive lengthening of 3' UTRs in the mammalian brain.

Miura P, Shenker S, Andreu-Agullo C, Westholm JO, Lai EC.

Genome Res. 2013 May;23(5):812-25. doi: 10.1101/gr.146886.112. Epub 2013 Mar 21.

7.

Global patterns of tissue-specific alternative polyadenylation in Drosophila.

Smibert P, Miura P, Westholm JO, Shenker S, May G, Duff MO, Zhang D, Eads BD, Carlson J, Brown JB, Eisman RC, Andrews J, Kaufman T, Cherbas P, Celniker SE, Graveley BR, Lai EC.

Cell Rep. 2012 Mar 29;1(3):277-89. Erratum in: Cell Rep. 2013 Mar 28;3(3):969.

8.

Efficient traversal of beta-sheet protein folding pathways using ensemble models.

Shenker S, O'Donnell CW, Devadas S, Berger B, WaldispĆ¼hl J.

J Comput Biol. 2011 Nov;18(11):1635-47. doi: 10.1089/cmb.2011.0176. Epub 2011 Sep 29.

PMID:
21958108
9.

Self-association studies of the bifunctional N-acetylglucosamine-1-phosphate uridyltransferase from Escherichia coli.

Trempe JF, Shenker S, Kozlov G, Gehring K.

Protein Sci. 2011 Apr;20(4):745-52. doi: 10.1002/pro.608. Epub 2011 Mar 11.

10.

The three-dimensional architecture of Hox cluster silencing.

Ferraiuolo MA, Rousseau M, Miyamoto C, Shenker S, Wang XQ, Nadler M, Blanchette M, Dostie J.

Nucleic Acids Res. 2010 Nov;38(21):7472-84. doi: 10.1093/nar/gkq644. Epub 2010 Jul 25.

11.

Chromatin conformation signatures of cellular differentiation.

Fraser J, Rousseau M, Shenker S, Ferraiuolo MA, Hayashizaki Y, Blanchette M, Dostie J.

Genome Biol. 2009;10(4):R37. doi: 10.1186/gb-2009-10-4-r37. Epub 2009 Apr 19.

12.

Viscosity bound and causality violation.

Brigante M, Liu H, Myers RC, Shenker S, Yaida S.

Phys Rev Lett. 2008 May 16;100(19):191601. Epub 2008 May 15.

PMID:
18518436
13.

Scaling phenomena in the Internet: critically examining criticality.

Willinger W, Govindan R, Jamin S, Paxson V, Shenker S.

Proc Natl Acad Sci U S A. 2002 Feb 19;99 Suppl 1:2573-80.

14.

Family limited partnerships.

Shenker SJ.

Mich Med. 1996 Jan;95(1):36. No abstract available.

PMID:
8820939
15.

Black hole entropy in the O(N) model.

Kabat D, Shenker SH, Strassler MJ.

Phys Rev D Part Fields. 1995 Dec 15;52(12):7027-7036. No abstract available.

PMID:
10019243
16.

Modular cosmology.

Banks T, Berkooz M, Shenker SH, Moore G, Steinhardt PJ.

Phys Rev D Part Fields. 1995 Sep 15;52(6):3548-3562. No abstract available.

PMID:
10019579
17.

Hairy black holes in string theory.

Giddings SB, Harvey JA, Polchinski JG, Shenker SH, Strominger A.

Phys Rev D Part Fields. 1994 Nov 15;50(10):6422-6426. No abstract available.

PMID:
10017611
18.

Note on background (in)dependence.

Seiberg N, Shenker S.

Phys Rev D Part Fields. 1992 Jun 15;45(12):4581-4587. No abstract available.

PMID:
10014369
19.

Reticuloendothelial system Fc receptor function in systemic lupus erythematosus: effect of decreased sensitization on clearance of autologous erythrocytes.

Kabbash L, Esdaile J, Shenker S, Decary F, Danoff D, Fuks A, Shuster J.

J Rheumatol. 1987 Jun;14(3):487-9.

PMID:
3114484
20.

The Toronto Junction Triangle Health Study: a response to a community health emergency.

Spitzer WO, Suissa S, Eastridge L, Shenker S, Germanson T, Murdie RA, MacPherson AS.

Can J Public Health. 1986 Jul-Aug;77(4):256-62. No abstract available.

PMID:
3756741
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