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Draft Genome Sequences of Six Pseudoalteromonas Strains, P1-7a, P1-9, P1-13-1a, P1-16-1b, P1-25, and P1-26, Which Induce Larval Settlement and Metamorphosis in Hydractinia echinata.

Klassen JL, Wolf T, Rischer M, Guo H, Shelest E, Clardy J, Beemelmanns C.

Genome Announc. 2015 Dec 17;3(6). pii: e01477-15. doi: 10.1128/genomeA.01477-15.


Genome Sequences of Three Pseudoalteromonas Strains (P1-8, P1-11, and P1-30), Isolated from the Marine Hydroid Hydractinia echinata.

Klassen JL, Rischer M, Wolf T, Guo H, Shelest E, Clardy J, Beemelmanns C.

Genome Announc. 2015 Dec 10;3(6). pii: e01380-15. doi: 10.1128/genomeA.01380-15.


CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes.

Wolf T, Shelest V, Nath N, Shelest E.

Bioinformatics. 2015 Dec 9. pii: btv713. [Epub ahead of print]


Multimodular type I polyketide synthases in algae evolve by module duplications and displacement of AT domains in trans.

Shelest E, Heimerl N, Fichtner M, Sasso S.

BMC Genomics. 2015 Nov 26;16(1):1015. doi: 10.1186/s12864-015-2222-9.


Glucocorticoids limit acute lung inflammation in concert with inflammatory stimuli by induction of SphK1.

Vettorazzi S, Bode C, Dejager L, Frappart L, Shelest E, Klaßen C, Tasdogan A, Reichardt HM, Libert C, Schneider M, Weih F, Henriette Uhlenhaut N, David JP, Gräler M, Kleiman A, Tuckermann JP.

Nat Commun. 2015 Jul 17;6:7796. doi: 10.1038/ncomms8796.


Comments on the distribution and phylogeny of type I polyketide synthases and nonribosomal peptide synthetases in eukaryotes.

Sasso S, Shelest E, Hoffmeister D.

Proc Natl Acad Sci U S A. 2014 Sep 23;111(38):E3946. doi: 10.1073/pnas.1412766111. Epub 2014 Sep 2. No abstract available.


Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina).

Schwartze VU, Winter S, Shelest E, Marcet-Houben M, Horn F, Wehner S, Linde J, Valiante V, Sammeth M, Riege K, Nowrousian M, Kaerger K, Jacobsen ID, Marz M, Brakhage AA, Gabaldón T, Böcker S, Voigt K.

PLoS Genet. 2014 Aug 14;10(8):e1004496. doi: 10.1371/journal.pgen.1004496. eCollection 2014 Aug.


Terrein biosynthesis in Aspergillus terreus and its impact on phytotoxicity.

Zaehle C, Gressler M, Shelest E, Geib E, Hertweck C, Brock M.

Chem Biol. 2014 Jun 19;21(6):719-31. doi: 10.1016/j.chembiol.2014.03.010. Epub 2014 May 8.


[Intensity of intravascular microcoagulation in chronic obstructive pulmonary disease with atherotrombosis and thrombophilia].

Shelest EA, Popova LV, Shuganov EG, Bokarev IN.

Klin Med (Mosk). 2013;91(11):4-7. Review. Russian.


The fungal α-aminoadipate pathway for lysine biosynthesis requires two enzymes of the aconitase family for the isomerization of homocitrate to homoisocitrate.

Fazius F, Shelest E, Gebhardt P, Brock M.

Mol Microbiol. 2012 Dec;86(6):1508-30. doi: 10.1111/mmi.12076. Epub 2012 Nov 6.


Evolutionary imprint of catalytic domains in fungal PKS-NRPS hybrids.

Boettger D, Bergmann H, Kuehn B, Shelest E, Hertweck C.

Chembiochem. 2012 Nov 5;13(16):2363-73. doi: 10.1002/cbic.201200449. Epub 2012 Sep 28.


Breaking the silence: protein stabilization uncovers silenced biosynthetic gene clusters in the fungus Aspergillus nidulans.

Gerke J, Bayram O, Feussner K, Landesfeind M, Shelest E, Feussner I, Braus GH.

Appl Environ Microbiol. 2012 Dec;78(23):8234-44. doi: 10.1128/AEM.01808-12. Epub 2012 Sep 21.


Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection.

Martinez DA, Oliver BG, Gräser Y, Goldberg JM, Li W, Martinez-Rossi NM, Monod M, Shelest E, Barton RC, Birch E, Brakhage AA, Chen Z, Gurr SJ, Heiman D, Heitman J, Kosti I, Rossi A, Saif S, Samalova M, Saunders CW, Shea T, Summerbell RC, Xu J, Young S, Zeng Q, Birren BW, Cuomo CA, White TC.

MBio. 2012 Sep 4;3(5):e00259-12. doi: 10.1128/mBio.00259-12. Print 2012.


Novel traits of Trichoderma predicted through the analysis of its secretome.

Druzhinina IS, Shelest E, Kubicek CP.

FEMS Microbiol Lett. 2012 Dec;337(1):1-9. doi: 10.1111/j.1574-6968.2012.02665.x. Epub 2012 Sep 18. Review.


SiTaR: a novel tool for transcription factor binding site prediction.

Fazius E, Shelest V, Shelest E.

Bioinformatics. 2011 Oct 15;27(20):2806-11. doi: 10.1093/bioinformatics/btr492. Epub 2011 Sep 4.


Comparative and functional genomics provide insights into the pathogenicity of dermatophytic fungi.

Burmester A, Shelest E, Glöckner G, Heddergott C, Schindler S, Staib P, Heidel A, Felder M, Petzold A, Szafranski K, Feuermann M, Pedruzzi I, Priebe S, Groth M, Winkler R, Li W, Kniemeyer O, Schroeckh V, Hertweck C, Hube B, White TC, Platzer M, Guthke R, Heitman J, Wöstemeyer J, Zipfel PF, Monod M, Brakhage AA.

Genome Biol. 2011;12(1):R7. doi: 10.1186/gb-2011-12-1-r7. Epub 2011 Jan 19.


Activation of a silent fungal polyketide biosynthesis pathway through regulatory cross talk with a cryptic nonribosomal peptide synthetase gene cluster.

Bergmann S, Funk AN, Scherlach K, Schroeckh V, Shelest E, Horn U, Hertweck C, Brakhage AA.

Appl Environ Microbiol. 2010 Dec;76(24):8143-9. doi: 10.1128/AEM.00683-10. Epub 2010 Oct 15.


DistanceScan: a tool for promoter modeling.

Shelest V, Albrecht D, Shelest E.

Bioinformatics. 2010 Jun 1;26(11):1460-2. doi: 10.1093/bioinformatics/btq132. Epub 2010 Mar 25.


Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans.

Schroeckh V, Scherlach K, Nützmann HW, Shelest E, Schmidt-Heck W, Schuemann J, Martin K, Hertweck C, Brakhage AA.

Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14558-63. doi: 10.1073/pnas.0901870106. Epub 2009 Aug 6.


Identification of the novel penicillin biosynthesis gene aatB of Aspergillus nidulans and its putative evolutionary relationship to this fungal secondary metabolism gene cluster.

Spröte P, Hynes MJ, Hortschansky P, Shelest E, Scharf DH, Wolke SM, Brakhage AA.

Mol Microbiol. 2008 Oct;70(2):445-61.

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