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Results: 1 to 20 of 24


Domestication process of the goat revealed by an analysis of the nearly complete mitochondrial protein-encoding genes.

Nomura K, Yonezawa T, Mano S, Kawakami S, Shedlock AM, Hasegawa M, Amano T.

PLoS One. 2013 Aug 1;8(8):e67775. doi: 10.1371/journal.pone.0067775. Print 2013.


The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.

Genome Biol. 2013 Mar 28;14(3):R28. doi: 10.1186/gb-2013-14-3-r28.


High altitude adaptation of the schizothoracine fishes (Cyprinidae) revealed by the mitochondrial genome analyses.

Li Y, Ren Z, Shedlock AM, Wu J, Sang L, Tersing T, Hasegawa M, Yonezawa T, Zhong Y.

Gene. 2013 Apr 1;517(2):169-78. doi: 10.1016/j.gene.2012.12.096. Epub 2013 Jan 14.


The genome of the green anole lizard and a comparative analysis with birds and mammals.

Alföldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor RE, Jaffe JD, Ray DA, Boissinot S, Shedlock AM, Botka C, Castoe TA, Colbourne JK, Fujita MK, Moreno RG, ten Hallers BF, Haussler D, Heger A, Heiman D, Janes DE, Johnson J, de Jong PJ, Koriabine MY, Lara M, Novick PA, Organ CL, Peach SE, Poe S, Pollock DD, de Queiroz K, Sanger T, Searle S, Smith JD, Smith Z, Swofford R, Turner-Maier J, Wade J, Young S, Zadissa A, Edwards SV, Glenn TC, Schneider CJ, Losos JB, Lander ES, Breen M, Ponting CP, Lindblad-Toh K.

Nature. 2011 Aug 31;477(7366):587-91. doi: 10.1038/nature10390.


Genome evolution in Reptilia, the sister group of mammals.

Janes DE, Organ CL, Fujita MK, Shedlock AM, Edwards SV.

Annu Rev Genomics Hum Genet. 2010;11:239-64. doi: 10.1146/annurev-genom-082509-141646. Review.


Evolutionary history of anglerfishes (Teleostei: Lophiiformes): a mitogenomic perspective.

Miya M, Pietsch TW, Orr JW, Arnold RJ, Satoh TP, Shedlock AM, Ho HC, Shimazaki M, Yabe M, Nishida M.

BMC Evol Biol. 2010 Feb 23;10:58. doi: 10.1186/1471-2148-10-58.


Palaeogenomics of pterosaurs and the evolution of small genome size in flying vertebrates.

Organ CL, Shedlock AM.

Biol Lett. 2009 Feb 23;5(1):47-50. doi: 10.1098/rsbl.2008.0491.


Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles.

Thomson RC, Shedlock AM, Edwards SV, Shaffer HB.

Mol Phylogenet Evol. 2008 Nov;49(2):514-25. doi: 10.1016/j.ympev.2008.08.006. Epub 2008 Aug 12.


Amniote phylogenomics: testing evolutionary hypotheses with BAC library scanning and targeted clone analysis of large-scale DNA sequences from reptiles.

Shedlock AM, Janes DE, Edwards SV.

Methods Mol Biol. 2008;422:91-117. doi: 10.1007/978-1-59745-581-7_7.


Phylogenomic investigation of CR1 LINE diversity in reptiles.

Shedlock AM.

Syst Biol. 2006 Dec;55(6):902-11.


Origin of avian genome size and structure in non-avian dinosaurs.

Organ CL, Shedlock AM, Meade A, Pagel M, Edwards SV.

Nature. 2007 Mar 8;446(7132):180-4.


Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome.

Shedlock AM, Botka CW, Zhao S, Shetty J, Zhang T, Liu JS, Deschavanne PJ, Edwards SV.

Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2767-72. Epub 2007 Feb 16.


SINEs of speciation: tracking lineages with retroposons.

Shedlock AM, Takahashi K, Okada N.

Trends Ecol Evol. 2004 Oct;19(10):545-53.


Phylogenetics of modern birds in the era of genomics.

Edwards SV, Bryan Jennings W, Shedlock AM.

Proc Biol Sci. 2005 May 22;272(1567):979-92. Review.


Assigning African elephant DNA to geographic region of origin: applications to the ivory trade.

Wasser SK, Shedlock AM, Comstock K, Ostrander EA, Mutayoba B, Stephens M.

Proc Natl Acad Sci U S A. 2004 Oct 12;101(41):14847-52. Epub 2004 Sep 30.


Retroposon mapping in molecular systematics.

Okada N, Shedlock AM, Nikaido M.

Methods Mol Biol. 2004;260:189-226.


SINE evolution, missing data, and the origin of whales.

Shedlock AM, Milinkovitch MC, Okada N.

Syst Biol. 2000 Dec;49(4):808-17. No abstract available.


Retroposon analysis of major cetacean lineages: the monophyly of toothed whales and the paraphyly of river dolphins.

Nikaido M, Matsuno F, Hamilton H, Brownell RL Jr, Cao Y, Ding W, Zuoyan Z, Shedlock AM, Fordyce RE, Hasegawa M, Okada N.

Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7384-9.

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