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Items: 1 to 20 of 38

1.

The Noncanonical Role of ULK/ATG1 in ER-to-Golgi Trafficking Is Essential for Cellular Homeostasis.

Joo JH, Wang B, Frankel E, Ge L, Xu L, Iyengar R, Li-Harms X, Wright C, Shaw TI, Lindsten T, Green DR, Peng J, Hendershot LM, Kilic F, Sze JY, Audhya A, Kundu M.

Mol Cell. 2016 Jun 16;62(6):982. doi: 10.1016/j.molcel.2016.05.030. No abstract available.

PMID:
27315557
2.

JUMPg: An Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells.

Li Y, Wang X, Cho JH, Shaw TI, Wu Z, Bai B, Wang H, Zhou S, Beach TG, Wu G, Zhang J, Peng J.

J Proteome Res. 2016 Jul 1;15(7):2309-20. doi: 10.1021/acs.jproteome.6b00344. Epub 2016 Jun 13.

PMID:
27225868
3.

The Noncanonical Role of ULK/ATG1 in ER-to-Golgi Trafficking Is Essential for Cellular Homeostasis.

Joo JH, Wang B, Frankel E, Ge L, Xu L, Iyengar R, Li-Harms X, Wright C, Shaw TI, Lindsten T, Green DR, Peng J, Hendershot LM, Kilic F, Sze JY, Audhya A, Kundu M.

Mol Cell. 2016 May 19;62(4):491-506. doi: 10.1016/j.molcel.2016.04.020.

PMID:
27203176
4.

Rapid Microbiome Changes in Freshly Deposited Cow Feces under Field Conditions.

Wong K, Shaw TI, Oladeinde A, Glenn TC, Oakley B, Molina M.

Front Microbiol. 2016 Apr 13;7:500. doi: 10.3389/fmicb.2016.00500. eCollection 2016.

5.

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, Durbin R, Earl D, Emrich S, Fedotov P, Fonseca NA, Ganapathy G, Gibbs RA, Gnerre S, Godzaridis E, Goldstein S, Haimel M, Hall G, Haussler D, Hiatt JB, Ho IY, Howard J, Hunt M, Jackman SD, Jaffe DB, Jarvis ED, Jiang H, Kazakov S, Kersey PJ, Kitzman JO, Knight JR, Koren S, Lam TW, Lavenier D, Laviolette F, Li Y, Li Z, Liu B, Liu Y, Luo R, Maccallum I, Macmanes MD, Maillet N, Melnikov S, Naquin D, Ning Z, Otto TD, Paten B, Paulo OS, Phillippy AM, Pina-Martins F, Place M, Przybylski D, Qin X, Qu C, Ribeiro FJ, Richards S, Rokhsar DS, Ruby JG, Scalabrin S, Schatz MC, Schwartz DC, Sergushichev A, Sharpe T, Shaw TI, Shendure J, Shi Y, Simpson JT, Song H, Tsarev F, Vezzi F, Vicedomini R, Vieira BM, Wang J, Worley KC, Yin S, Yiu SM, Yuan J, Zhang G, Zhang H, Zhou S, Korf IF.

Gigascience. 2013 Jul 22;2(1):10. doi: 10.1186/2047-217X-2-10.

6.

HIV N-linked glycosylation site analyzer and its further usage in anchored alignment.

Shaw TI, Zhang M.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W454-8. doi: 10.1093/nar/gkt472. Epub 2013 Jun 8.

7.

STRAW: Species TRee Analysis Web server.

Shaw TI, Ruan Z, Glenn TC, Liu L.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W238-41. doi: 10.1093/nar/gkt377. Epub 2013 May 9.

8.

Expression profiling of lymph node cells from deer mice infected with Andes virus.

Schountz T, Shaw TI, Glenn TC, Feldmann H, Prescott J.

BMC Immunol. 2013 Apr 9;14:18. doi: 10.1186/1471-2172-14-18.

9.

Transcriptome sequencing and annotation for the Jamaican fruit bat (Artibeus jamaicensis).

Shaw TI, Srivastava A, Chou WC, Liu L, Hawkinson A, Glenn TC, Adams R, Schountz T.

PLoS One. 2012;7(11):e48472. doi: 10.1371/journal.pone.0048472. Epub 2012 Nov 15.

10.

Information-theoretic uncertainty of SCFG-modeled folding space of the non-coding RNA.

Manzourolajdad A, Wang Y, Shaw TI, Malmberg RL.

J Theor Biol. 2013 Feb 7;318:140-63. doi: 10.1016/j.jtbi.2012.10.023. Epub 2012 Nov 14.

11.

Transcriptome analysis of a North American songbird, Melospiza melodia.

Srivastava A, Winker K, Shaw TI, Jones KL, Glenn TC.

DNA Res. 2012;19(4):325-33. doi: 10.1093/dnares/dss015. Epub 2012 May 29.

12.

Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds.

Wang Y, Manzour A, Shareghi P, Shaw TI, Li YW, Malmberg RL, Cai L.

BMC Bioinformatics. 2012 Apr 12;13 Suppl 5:S1. doi: 10.1186/1471-2105-13-S5-S1.

13.

Assemblathon 1: a competitive assessment of de novo short read assembly methods.

Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, Simpson JT, Fonseca NA, Birol İ, Docking TR, Ho IY, Rokhsar DS, Chikhi R, Lavenier D, Chapuis G, Naquin D, Maillet N, Schatz MC, Kelley DR, Phillippy AM, Koren S, Yang SP, Wu W, Chou WC, Srivastava A, Shaw TI, Ruby JG, Skewes-Cox P, Betegon M, Dimon MT, Solovyev V, Seledtsov I, Kosarev P, Vorobyev D, Ramirez-Gonzalez R, Leggett R, MacLean D, Xia F, Luo R, Li Z, Xie Y, Liu B, Gnerre S, MacCallum I, Przybylski D, Ribeiro FJ, Yin S, Sharpe T, Hall G, Kersey PJ, Durbin R, Jackman SD, Chapman JA, Huang X, DeRisi JL, Caccamo M, Li Y, Jaffe DB, Green RE, Haussler D, Korf I, Paten B.

Genome Res. 2011 Dec;21(12):2224-41. doi: 10.1101/gr.126599.111. Epub 2011 Sep 16.

14.

Analyzing modular RNA structure reveals low global structural entropy in microRNA sequence.

Shaw TI, Manzour A, Wang Y, Malmberg RL, Cai L.

J Bioinform Comput Biol. 2011 Apr;9(2):283-98.

PMID:
21523933
15.

RNApasta: a tool for analysis of RNA structural alignments.

Malmberg RL, Shaw TI, Cai L.

Int J Bioinform Res Appl. 2010;6(6):571-83.

PMID:
21354963
16.

Movement in a ganglion.

Shaw TI, Newby BJ.

Biochim Biophys Acta. 1972 Jan 17;255(1):411-2. No abstract available.

PMID:
5011005
17.

Sodium transport by perfused giant axons of Loligo.

Baker PF, Foster RF, Gilbert DS, Shaw TI.

J Physiol. 1971 Dec;219(2):487-506.

18.
19.

Extrusion and perfusion of the giant nerve fibre of Myxicola infundibulum.

Gilbert DS, Shaw TI.

J Physiol. 1969 Sep;204(1):28P-29P. No abstract available.

20.

Maintenance of sodium transport in perfused axons.

Foster RF, Gilbert DS, Shaw TI.

Biochim Biophys Acta. 1969 Jul 15;183(2):401-3. No abstract available.

PMID:
5792250
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