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Results: 1 to 20 of 86

1.

The ABC transporter, AbcB3, mediates cAMP export in D. discoideum development.

Miranda ER, Nam EA, Kuspa A, Shaulsky G.

Dev Biol. 2015 Jan 15;397(2):203-11. doi: 10.1016/j.ydbio.2014.11.006. Epub 2014 Nov 20.

PMID:
25448698
2.

Determination and inference of eukaryotic transcription factor sequence specificity.

Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, Walhout AJ, Bouget FY, Ratsch G, Larrondo LF, Ecker JR, Hughes TR.

Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009.

PMID:
25215497
3.

Nucleocytoplasmic shuttling of a GATA transcription factor functions as a development timer.

Cai H, Katoh-Kurasawa M, Muramoto T, Santhanam B, Long Y, Li L, Ueda M, Iglesias PA, Shaulsky G, Devreotes PN.

Science. 2014 Mar 21;343(6177):1249531. doi: 10.1126/science.1249531.

4.

ABC transporters in Dictyostelium discoideum development.

Miranda ER, Zhuchenko O, Toplak M, Santhanam B, Zupan B, Kuspa A, Shaulsky G.

PLoS One. 2013 Aug 14;8(8):e70040. doi: 10.1371/journal.pone.0070040. eCollection 2013.

5.

Kin recognition protects cooperators against cheaters.

Ho HI, Hirose S, Kuspa A, Shaulsky G.

Curr Biol. 2013 Aug 19;23(16):1590-5. doi: 10.1016/j.cub.2013.06.049. Epub 2013 Aug 1.

6.

Bacterial discrimination by dictyostelid amoebae reveals the complexity of ancient interspecies interactions.

Nasser W, Santhanam B, Miranda ER, Parikh A, Juneja K, Rot G, Dinh C, Chen R, Zupan B, Shaulsky G, Kuspa A.

Curr Biol. 2013 May 20;23(10):862-72. doi: 10.1016/j.cub.2013.04.034. Epub 2013 May 9.

7.

Transcriptional profiling of Dictyostelium with RNA sequencing.

Miranda ER, Rot G, Toplak M, Santhanam B, Curk T, Shaulsky G, Zupan B.

Methods Mol Biol. 2013;983:139-71. doi: 10.1007/978-1-62703-302-2_8.

8.

A new social gene in Dictyostelium discoideum, chtB.

Santorelli LA, Kuspa A, Shaulsky G, Queller DC, Strassmann JE.

BMC Evol Biol. 2013 Jan 9;13:4. doi: 10.1186/1471-2148-13-4.

9.

BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium.

Huang E, Talukder S, Hughes TR, Curk T, Zupan B, Shaulsky G, Katoh-Kurasawa M.

Dev Biol. 2011 Oct 1;358(1):137-46. doi: 10.1016/j.ydbio.2011.07.017. Epub 2011 Jul 23.

10.

The putative bZIP transcription factor BzpN slows proliferation and functions in the regulation of cell density by autocrine signals in Dictyostelium.

Phillips JE, Huang E, Shaulsky G, Gomer RH.

PLoS One. 2011;6(7):e21765. doi: 10.1371/journal.pone.0021765. Epub 2011 Jul 7.

11.

Self-recognition in social amoebae is mediated by allelic pairs of tiger genes.

Hirose S, Benabentos R, Ho HI, Kuspa A, Shaulsky G.

Science. 2011 Jul 22;333(6041):467-70. doi: 10.1126/science.1203903. Epub 2011 Jun 23.

12.

Developmental changes in transcriptional profiles.

Loomis WF, Shaulsky G.

Dev Growth Differ. 2011 May;53(4):567-75. doi: 10.1111/j.1440-169X.2010.01241.x. Epub 2011 Mar 30. Review.

PMID:
21447097
13.

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum.

Sucgang R, Kuo A, Tian X, Salerno W, Parikh A, Feasley CL, Dalin E, Tu H, Huang E, Barry K, Lindquist E, Shapiro H, Bruce D, Schmutz J, Salamov A, Fey P, Gaudet P, Anjard C, Babu MM, Basu S, Bushmanova Y, van der Wel H, Katoh-Kurasawa M, Dinh C, Coutinho PM, Saito T, Elias M, Schaap P, Kay RR, Henrissat B, Eichinger L, Rivero F, Putnam NH, West CM, Loomis WF, Chisholm RL, Shaulsky G, Strassmann JE, Queller DC, Kuspa A, Grigoriev IV.

Genome Biol. 2011;12(2):R20. doi: 10.1186/gb-2011-12-2-r20. Epub 2011 Feb 28.

14.

New components of the Dictyostelium PKA pathway revealed by Bayesian analysis of expression data.

Parikh A, Huang E, Dinh C, Zupan B, Kuspa A, Subramanian D, Shaulsky G.

BMC Bioinformatics. 2010 Mar 31;11:163. doi: 10.1186/1471-2105-11-163.

15.

Conserved developmental transcriptomes in evolutionarily divergent species.

Parikh A, Miranda ER, Katoh-Kurasawa M, Fuller D, Rot G, Zagar L, Curk T, Sucgang R, Chen R, Zupan B, Loomis WF, Kuspa A, Shaulsky G.

Genome Biol. 2010;11(3):R35. doi: 10.1186/gb-2010-11-3-r35. Epub 2010 Mar 17.

16.

Cheating by exploitation of developmental prestalk patterning in Dictyostelium discoideum.

Khare A, Shaulsky G.

PLoS Genet. 2010 Feb 26;6(2):e1000854. doi: 10.1371/journal.pgen.1000854.

17.

Cheater-resistance is not futile.

Khare A, Santorelli LA, Strassmann JE, Queller DC, Kuspa A, Shaulsky G.

Nature. 2009 Oct 15;461(7266):980-2. doi: 10.1038/nature08472. Epub 2009 Sep 30.

PMID:
19794414
18.

dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface.

Rot G, Parikh A, Curk T, Kuspa A, Shaulsky G, Zupan B.

BMC Bioinformatics. 2009 Aug 25;10:265. doi: 10.1186/1471-2105-10-265.

19.

Learning to get along despite struggling to get by.

Ostrowski EA, Shaulsky G.

Genome Biol. 2009;10(5):218. doi: 10.1186/gb-2009-10-5-218. Epub 2009 May 26.

20.

Rule-based clustering for gene promoter structure discovery.

Curk T, Petrovic U, Shaulsky G, Zupan B.

Methods Inf Med. 2009;48(3):229-35. doi: 10.3414/ME9225. Epub 2009 Apr 20.

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