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Results: 1 to 20 of 45

1.

Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly.

Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar'an B.

BMC Genomics. 2014 Aug 23;15(1):708. doi: 10.1186/1471-2164-15-708.

PMID:
25150411
[PubMed - in process]
Free Article
2.

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VH, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CH, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P.

Science. 2014 Aug 22;345(6199):950-3. doi: 10.1126/science.1253435. Epub 2014 Aug 21.

PMID:
25146293
[PubMed - in process]
3.

Gene-based SNP discovery and genetic mapping in pea.

Sindhu A, Ramsay L, Sanderson LA, Stonehouse R, Li R, Condie J, Shunmugam AS, Liu Y, Jha AB, Diapari M, Burstin J, Aubert G, Tar'an B, Bett KE, Warkentin TD, Sharpe AG.

Theor Appl Genet. 2014 Aug 15. [Epub ahead of print]

PMID:
25119872
[PubMed - as supplied by publisher]
4.

High-density single nucleotide polymorphism (SNP) array mapping in Brassica oleracea: identification of QTL associated with carotenoid variation in broccoli florets.

Brown AF, Yousef GG, Chebrolu KK, Byrd RW, Everhart KW, Thomas A, Reid RW, Parkin IA, Sharpe AG, Oliver R, Guzman I, Jackson EW.

Theor Appl Genet. 2014 Sep;127(9):2051-64. doi: 10.1007/s00122-014-2360-5. Epub 2014 Aug 14.

PMID:
25119868
[PubMed - in process]
5.

Polyploid Evolution of the Brassicaceae during the Cenozoic Era.

Kagale S, Robinson SJ, Nixon J, Xiao R, Huebert T, Condie J, Kessler D, Clarke WE, Edger PP, Links MG, Sharpe AG, Parkin IA.

Plant Cell. 2014 Jul;26(7):2777-91. doi: 10.1105/tpc.114.126391. Epub 2014 Jul 17.

PMID:
25035408
[PubMed - in process]
Free PMC Article
6.

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.

Parkin IA, Koh C, Tang H, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Pires JC, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang X, Paterson AH, King G, Bancroft I, Chalhoub B, Sharpe AG.

Genome Biol. 2014 Jun 10;15(6):R77. doi: 10.1186/gb-2014-15-6-r77.

PMID:
24916971
[PubMed - in process]
Free PMC Article
7.

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes.

Liu S, Liu Y, Yang X, Tong C, Edwards D, Parkin IA, Zhao M, Ma J, Yu J, Huang S, Wang X, Wang J, Lu K, Fang Z, Bancroft I, Yang TJ, Hu Q, Wang X, Yue Z, Li H, Yang L, Wu J, Zhou Q, Wang W, King GJ, Pires JC, Lu C, Wu Z, Sampath P, Wang Z, Guo H, Pan S, Yang L, Min J, Zhang D, Jin D, Li W, Belcram H, Tu J, Guan M, Qi C, Du D, Li J, Jiang L, Batley J, Sharpe AG, Park BS, Ruperao P, Cheng F, Waminal NE, Huang Y, Dong C, Wang L, Li J, Hu Z, Zhuang M, Huang Y, Huang J, Shi J, Mei D, Liu J, Lee TH, Wang J, Jin H, Li Z, Li X, Zhang J, Xiao L, Zhou Y, Liu Z, Liu X, Qin R, Tang X, Liu W, Wang Y, Zhang Y, Lee J, Kim HH, Denoeud F, Xu X, Liang X, Hua W, Wang X, Wang J, Chalhoub B, Paterson AH.

Nat Commun. 2014 May 23;5:3930. doi: 10.1038/ncomms4930.

PMID:
24852848
[PubMed - in process]
8.

The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure.

Kagale S, Koh C, Nixon J, Bollina V, Clarke WE, Tuteja R, Spillane C, Robinson SJ, Links MG, Clarke C, Higgins EE, Huebert T, Sharpe AG, Parkin IA.

Nat Commun. 2014 Apr 23;5:3706. doi: 10.1038/ncomms4706.

PMID:
24759634
[PubMed - in process]
Free PMC Article
9.

Comparison of five major trichome regulatory genes in Brassica villosa with orthologues within the Brassicaceae.

Nayidu NK, Kagale S, Taheri A, Withana-Gamage TS, Parkin IA, Sharpe AG, Gruber MY.

PLoS One. 2014 Apr 22;9(4):e95877. doi: 10.1371/journal.pone.0095877. eCollection 2014.

PMID:
24755905
[PubMed - in process]
Free PMC Article
10.

Comprehensive transcriptome assembly of Chickpea (Cicer arietinum L.) using sanger and next generation sequencing platforms: development and applications.

Kudapa H, Azam S, Sharpe AG, Taran B, Li R, Deonovic B, Cameron C, Farmer AD, Cannon SB, Varshney RK.

PLoS One. 2014 Jan 23;9(1):e86039. doi: 10.1371/journal.pone.0086039. eCollection 2014.

PMID:
24465857
[PubMed - in process]
Free PMC Article
11.

A mutant Brassica napus (canola) population for the identification of new genetic diversity via TILLING and next generation sequencing.

Gilchrist EJ, Sidebottom CH, Koh CS, Macinnes T, Sharpe AG, Haughn GW.

PLoS One. 2013 Dec 20;8(12):e84303. doi: 10.1371/journal.pone.0084303. eCollection 2013.

PMID:
24376800
[PubMed - in process]
Free PMC Article
12.

Genomic DNA enrichment using sequence capture microarrays: a novel approach to discover Sequence Nucleotide Polymorphisms (SNP) in Brassica napus L.

Clarke WE, Parkin IA, Gajardo HA, Gerhardt DJ, Higgins E, Sidebottom C, Sharpe AG, Snowdon RJ, Federico ML, Iniguez-Luy FL.

PLoS One. 2013 Dec 3;8(12):e81992. doi: 10.1371/journal.pone.0081992. eCollection 2013.

PMID:
24312619
[PubMed - in process]
Free PMC Article
13.

A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits.

Raman H, Raman R, Kilian A, Detering F, Long Y, Edwards D, Parkin IA, Sharpe AG, Nelson MN, Larkan N, Zou J, Meng J, Aslam MN, Batley J, Cowling WA, Lydiate D.

BMC Genomics. 2013 Apr 23;14:277. doi: 10.1186/1471-2164-14-277.

PMID:
23617817
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea.

Navabi ZK, Huebert T, Sharpe AG, O'Neill CM, Bancroft I, Parkin IA.

BMC Genomics. 2013 Apr 15;14:250. doi: 10.1186/1471-2164-14-250.

PMID:
23586706
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Transcriptome Profiling Identifies Candidate Genes Associated with the Accumulation of Distinct Sulfur γ-Glutamyl Dipeptides in Phaseolus vulgaris and Vigna mungo Seeds.

Liao D, Cram D, Sharpe AG, Marsolais F.

Front Plant Sci. 2013 Mar 25;4:60. doi: 10.3389/fpls.2013.00060. eCollection 2013.

PMID:
23532826
[PubMed]
Free PMC Article
16.

Ancient orphan crop joins modern era: gene-based SNP discovery and mapping in lentil.

Sharpe AG, Ramsay L, Sanderson LA, Fedoruk MJ, Clarke WE, Li R, Kagale S, Vijayan P, Vandenberg A, Bett KE.

BMC Genomics. 2013 Mar 18;14:192. doi: 10.1186/1471-2164-14-192.

PMID:
23506258
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement.

Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla-Garcia N, Condie JA, Upadhyaya HD, Luo MC, Thudi M, Gowda CL, Singh NP, Lichtenzveig J, Gali KK, Rubio J, Nadarajan N, Dolezel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G, Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR.

Nat Biotechnol. 2013 Mar;31(3):240-6. doi: 10.1038/nbt.2491. Epub 2013 Jan 27.

PMID:
23354103
[PubMed - indexed for MEDLINE]
18.

Transcripts of sulphur metabolic genes are co-ordinately regulated in developing seeds of common bean lacking phaseolin and major lectins.

Liao D, Pajak A, Karcz SR, Chapman BP, Sharpe AG, Austin RS, Datla R, Dhaubhadel S, Marsolais F.

J Exp Bot. 2012 Oct;63(17):6283-95. doi: 10.1093/jxb/ers280. Epub 2012 Oct 12.

PMID:
23066144
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads.

Wang Z, Hobson N, Galindo L, Zhu S, Shi D, McDill J, Yang L, Hawkins S, Neutelings G, Datla R, Lambert G, Galbraith DW, Grassa CJ, Geraldes A, Cronk QC, Cullis C, Dash PK, Kumar PA, Cloutier S, Sharpe AG, Wong GK, Wang J, Deyholos MK.

Plant J. 2012 Nov;72(3):461-73. doi: 10.1111/j.1365-313X.2012.05093.x. Epub 2012 Aug 14.

PMID:
22757964
[PubMed - indexed for MEDLINE]
20.

Diversity array technology markers: genetic diversity analyses and linkage map construction in rapeseed (Brassica napus L.).

Raman H, Raman R, Nelson MN, Aslam MN, Rajasekaran R, Wratten N, Cowling WA, Kilian A, Sharpe AG, Schondelmaier J.

DNA Res. 2012;19(1):51-65. doi: 10.1093/dnares/dsr041. Epub 2011 Dec 22.

PMID:
22193366
[PubMed - indexed for MEDLINE]
Free PMC Article

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