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Results: 1 to 20 of 47

1.

Protein loop modeling using a new hybrid energy function and its application to modeling in inaccurate structural environments.

Park H, Lee GR, Heo L, Seok C.

PLoS One. 2014 Nov 24;9(11):e113811. doi: 10.1371/journal.pone.0113811. eCollection 2014.

PMID:
25419655
[PubMed - in process]
Free PMC Article
2.

GalaxySite: ligand-binding-site prediction by using molecular docking.

Heo L, Shin WH, Lee MS, Seok C.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W210-4. doi: 10.1093/nar/gku321. Epub 2014 Apr 21.

PMID:
24753427
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Structure of vaccinia virus A46, an inhibitor of TLR4 signaling pathway, shows the conformation of VIPER motif.

Kim Y, Lee H, Heo L, Seok C, Choe J.

Protein Sci. 2014 Jul;23(7):906-14. doi: 10.1002/pro.2472. Epub 2014 Apr 28.

PMID:
24723367
[PubMed - in process]
4.

Is posterior delamination in arthroscopic rotator cuff repair hidden to the posterior viewing portal?

Han Y, Shin JH, Seok CW, Lee CH, Kim SH.

Arthroscopy. 2013 Nov;29(11):1740-7. doi: 10.1016/j.arthro.2013.08.021.

PMID:
24209671
[PubMed - indexed for MEDLINE]
5.

Blind prediction of interfacial water positions in CAPRI.

Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond AS, Karaca E, Schmitz C, van Dijk M, Bonvin AM, Eisenstein M, Jiménez-García B, Grosdidier S, Solernou A, Pérez-Cano L, Pallara C, Fernández-Recio J, Xu J, Muthu P, Praneeth Kilambi K, Gray JJ, Grudinin S, Derevyanko G, Mitchell JC, Wieting J, Kanamori E, Tsuchiya Y, Murakami Y, Sarmiento J, Standley DM, Shirota M, Kinoshita K, Nakamura H, Chavent M, Ritchie DW, Park H, Ko J, Lee H, Seok C, Shen Y, Kozakov D, Vajda S, Kundrotas PJ, Vakser IA, Pierce BG, Hwang H, Vreven T, Weng Z, Buch I, Farkash E, Wolfson HJ, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Wojdyla JA, Kleanthous C, Wodak SJ.

Proteins. 2014 Apr;82(4):620-32. doi: 10.1002/prot.24439. Epub 2013 Nov 23.

PMID:
24155158
[PubMed - indexed for MEDLINE]
6.

GalaxyDock2: protein-ligand docking using beta-complex and global optimization.

Shin WH, Kim JK, Kim DS, Seok C.

J Comput Chem. 2013 Nov 15;34(30):2647-56. doi: 10.1002/jcc.23438. Epub 2013 Sep 24.

PMID:
24108416
[PubMed - indexed for MEDLINE]
7.

Impact of patellar height on unicompartment knee arthroplasty: does patella baja lead to an inferior outcome?

Neogi DS, Bae JH, Seok CW, Lim HC.

J Orthop Traumatol. 2014 Mar;15(1):47-54.

PMID:
24022249
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.

Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JP, Trellet M, Bonvin AM, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, Perez-Cano L, Pallara C, Jimenez B, Fernandez-Recio J, Flores S, Pacella M, Praneeth Kilambi K, Gray JJ, Popov P, Grudinin S, Esquivel-Rodríguez J, Kihara D, Zhao N, Korkin D, Zhu X, Demerdash ON, Mitchell JC, Kanamori E, Tsuchiya Y, Nakamura H, Lee H, Park H, Seok C, Sarmiento J, Liang S, Teraguchi S, Standley DM, Shimoyama H, Terashi G, Takeda-Shitaka M, Iwadate M, Umeyama H, Beglov D, Hall DR, Kozakov D, Vajda S, Pierce BG, Hwang H, Vreven T, Weng Z, Huang Y, Li H, Yang X, Ji X, Liu S, Xiao Y, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Velankar S, Janin J, Wodak SJ, Baker D.

Proteins. 2013 Nov;81(11):1980-7. doi: 10.1002/prot.24356. Epub 2013 Aug 23.

PMID:
23843247
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

GalaxyRefine: Protein structure refinement driven by side-chain repacking.

Heo L, Park H, Seok C.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W384-8. doi: 10.1093/nar/gkt458. Epub 2013 Jun 3.

PMID:
23737448
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Alternative zinc-binding sites explain the redox sensitivity of zinc-containing anti-sigma factors.

Heo L, Cho YB, Lee MS, Roe JH, Seok C.

Proteins. 2013 Sep;81(9):1644-52. doi: 10.1002/prot.24323. Epub 2013 Jun 17.

PMID:
23670838
[PubMed - indexed for MEDLINE]
11.

Switchable nanoporous sheets by the aqueous self-assembly of aromatic macrobicycles.

Kim Y, Shin S, Kim T, Lee D, Seok C, Lee M.

Angew Chem Int Ed Engl. 2013 Jun 17;52(25):6426-9. doi: 10.1002/anie.201210373. Epub 2013 May 6. No abstract available.

PMID:
23649976
[PubMed]
12.

What stabilizes close arginine pairing in proteins?

Lee D, Lee J, Seok C.

Phys Chem Chem Phys. 2013 Apr 28;15(16):5844-53. doi: 10.1039/c3cp00160a. Epub 2013 Mar 13.

PMID:
23486862
[PubMed - indexed for MEDLINE]
13.

New molecular interaction of IIA(Ntr) and HPr from Burkholderia pseudomallei identified by X-ray crystallography and docking studies.

Kim MS, Lee H, Heo L, Lim A, Seok C, Shin DH.

Proteins. 2013 Sep;81(9):1499-508. doi: 10.1002/prot.24275.

PMID:
23483653
[PubMed - indexed for MEDLINE]
14.

GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity.

Lee H, Park H, Ko J, Seok C.

Bioinformatics. 2013 Apr 15;29(8):1078-80. doi: 10.1093/bioinformatics/btt079. Epub 2013 Feb 14.

PMID:
23413437
[PubMed - indexed for MEDLINE]
Free Article
15.

GalaxyDock: protein-ligand docking with flexible protein side-chains.

Shin WH, Seok C.

J Chem Inf Model. 2012 Dec 21;52(12):3225-32. doi: 10.1021/ci300342z. Epub 2012 Dec 12.

PMID:
23198780
[PubMed - indexed for MEDLINE]
16.

Pulsating tubules from noncovalent macrocycles.

Huang Z, Kang SK, Banno M, Yamaguchi T, Lee D, Seok C, Yashima E, Lee M.

Science. 2012 Sep 21;337(6101):1521-6.

PMID:
22997334
[PubMed]
Free Article
17.

GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions.

Ko J, Park H, Seok C.

BMC Bioinformatics. 2012 Aug 10;13:198. doi: 10.1186/1471-2105-13-198.

PMID:
22883815
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

GalaxyWEB server for protein structure prediction and refinement.

Ko J, Park H, Heo L, Seok C.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W294-7. doi: 10.1093/nar/gks493. Epub 2012 May 30.

PMID:
22649060
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Discovery, design and synthesis of Y-shaped peroxisome proliferator-activated receptor δ agonists as potent anti-obesity agents in vivo.

Ham J, Hwang H, Kim E, Kim JA, Cho SJ, Ko J, Lee W, Lee J, Holla H, Banerjee J, Kim S, Yang I, Lee HJ, Shin K, Choi H, Nam SJ, Tak J, Hahn D, Oh T, Won DH, Lee TG, Choi J, Park MS, Seok C, Chin J, Kang H.

Eur J Med Chem. 2012 Jul;53:190-202. doi: 10.1016/j.ejmech.2012.03.055. Epub 2012 Apr 6.

PMID:
22534184
[PubMed - indexed for MEDLINE]
20.

Refinement of unreliable local regions in template-based protein models.

Park H, Seok C.

Proteins. 2012 Aug;80(8):1974-86. doi: 10.1002/prot.24086. Epub 2012 May 23.

PMID:
22488760
[PubMed - indexed for MEDLINE]

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