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Results: 1 to 20 of 21

1.

Transport of magnesium by a bacterial nramp-related gene.

Shin JH, Wakeman CA, Goodson JR, Rodionov DA, Freedman BG, Senger RS, Winkler WC.

PLoS Genet. 2014 Jun 26;10(6):e1004429. doi: 10.1371/journal.pgen.1004429. eCollection 2014 Jun.

PMID:
24968120
[PubMed - in process]
Free PMC Article
2.

Phenotypic profiling of antibiotic response signatures in Escherichia coli using Raman spectroscopy.

Athamneh AI, Alajlouni RA, Wallace RS, Seleem MN, Senger RS.

Antimicrob Agents Chemother. 2014 Mar;58(3):1302-14. doi: 10.1128/AAC.02098-13. Epub 2013 Dec 2.

PMID:
24295982
[PubMed - in process]
3.

Deriving metabolic engineering strategies from genome-scale modeling with flux ratio constraints.

Yen JY, Nazem-Bokaee H, Freedman BG, Athamneh AI, Senger RS.

Biotechnol J. 2013 May;8(5):581-94. doi: 10.1002/biot.201200234. Epub 2013 Apr 11.

PMID:
23460591
[PubMed - indexed for MEDLINE]
4.

Resolving cell composition through simple measurements, genome-scale modeling, and a genetic algorithm.

Senger RS, Nazem-Bokaee H.

Methods Mol Biol. 2013;985:85-101. doi: 10.1007/978-1-62703-299-5_5.

PMID:
23417800
[PubMed - indexed for MEDLINE]
5.

Peptide-guided surface-enhanced Raman scattering probes for localized cell composition analysis.

Athamneh AI, Senger RS.

Appl Environ Microbiol. 2012 Nov;78(21):7805-8. doi: 10.1128/AEM.02000-12. Epub 2012 Aug 24.

PMID:
22923413
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Are we ready for genome-scale modeling in plants?

Collakova E, Yen JY, Senger RS.

Plant Sci. 2012 Aug;191-192:53-70. doi: 10.1016/j.plantsci.2012.04.010. Epub 2012 May 3. Review.

PMID:
22682565
[PubMed - indexed for MEDLINE]
Free Article
7.

Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico.

McAnulty MJ, Yen JY, Freedman BG, Senger RS.

BMC Syst Biol. 2012 May 14;6:42. doi: 10.1186/1752-0509-6-42.

PMID:
22583864
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.

Milne CB, Eddy JA, Raju R, Ardekani S, Kim PJ, Senger RS, Jin YS, Blaschek HP, Price ND.

BMC Syst Biol. 2011 Aug 16;5:130. doi: 10.1186/1752-0509-5-130.

PMID:
21846360
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Biofuel production improvement with genome-scale models: The role of cell composition.

Senger RS.

Biotechnol J. 2010 Jul;5(7):671-85. doi: 10.1002/biot.201000007. Review.

PMID:
20540108
[PubMed - indexed for MEDLINE]
10.

Computational approaches in metabolic engineering.

Reed JL, Senger RS, Antoniewicz MR, Young JD.

J Biomed Biotechnol. 2010;2010:207414. doi: 10.1155/2010/207414. Epub 2011 Apr 7. No abstract available.

PMID:
21584279
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Microarray-based gene expression analysis as a process characterization tool to establish comparability of complex biological products: scale-up of a whole-cell immunotherapy product.

Wang M, Senger RS, Paredes C, Banik GG, Lin A, Papoutsakis ET.

Biotechnol Bioeng. 2009 Nov 1;104(4):796-808. doi: 10.1002/bit.22441.

PMID:
19591186
[PubMed - indexed for MEDLINE]
12.

Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis.

Senger RS, Papoutsakis ET.

Biotechnol Bioeng. 2008 Dec 1;101(5):1036-52. doi: 10.1002/bit.22010.

PMID:
18767192
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome-scale model for Clostridium acetobutylicum: Part II. Development of specific proton flux states and numerically determined sub-systems.

Senger RS, Papoutsakis ET.

Biotechnol Bioeng. 2008 Dec 1;101(5):1053-71. doi: 10.1002/bit.22009.

PMID:
18767191
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The transcriptional program underlying the physiology of clostridial sporulation.

Jones SW, Paredes CJ, Tracy B, Cheng N, Sillers R, Senger RS, Papoutsakis ET.

Genome Biol. 2008;9(7):R114. doi: 10.1186/gb-2008-9-7-r114. Epub 2008 Jul 16.

PMID:
18631379
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Prediction of N-linked glycan branching patterns using artificial neural networks.

Senger RS, Karim MN.

Math Biosci. 2008 Jan;211(1):89-104. Epub 2007 Oct 30.

PMID:
18054050
[PubMed - indexed for MEDLINE]
16.

A general framework for designing and validating oligomer-based DNA microarrays and its application to Clostridium acetobutylicum.

Paredes CJ, Senger RS, Spath IS, Borden JR, Sillers R, Papoutsakis ET.

Appl Environ Microbiol. 2007 Jul;73(14):4631-8. Epub 2007 May 25.

PMID:
17526797
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Optimization of fed-batch parameters and harvest time of CHO cell cultures for a glycosylated product with multiple mechanisms of inactivation.

Senger RS, Karim MN.

Biotechnol Bioeng. 2007 Oct 1;98(2):378-90.

PMID:
17385745
[PubMed - indexed for MEDLINE]
18.

Development of a culture sub-population induction model: signaling pathways synergy and taxanes production by Taxus canadensis.

Senger RS, Phisalaphong M, Karim MN, Linden JC.

Biotechnol Prog. 2006 Nov-Dec;22(6):1671-82.

PMID:
17137317
[PubMed - indexed for MEDLINE]
19.

Variable site-occupancy classification of N-linked glycosylation using artificial neural networks.

Senger RS, Karim MN.

Biotechnol Prog. 2005 Nov-Dec;21(6):1653-62.

PMID:
16321048
[PubMed - indexed for MEDLINE]
20.

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