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Results: 1 to 20 of 23

1.

Near real-time analysis of the phenotypic responses of Escherichia coli to 1-butanol exposure using Raman spectroscopy.

Zu TN, Athamneh AI, Wallace RS, Collakova E, Senger RS.

J Bacteriol. 2014 Aug 25. pii: JB.01590-14. [Epub ahead of print]

PMID:
25157078
[PubMed - as supplied by publisher]
2.

Transport of magnesium by a bacterial Nramp-related gene.

Shin JH, Wakeman CA, Goodson JR, Rodionov DA, Freedman BG, Senger RS, Winkler WC.

PLoS Genet. 2014 Jun 26;10(6):e1004429. doi: 10.1371/journal.pgen.1004429. eCollection 2014 Jun.

PMID:
24968120
[PubMed - in process]
Free PMC Article
3.

Designing novel cellulase systems through agent-based modeling and global sensitivity analysis.

Apte AA, Senger RS, Fong SS.

Bioengineered. 2014 Jul-Aug;5(4):243-53. doi: 10.4161/bioe.29160. Epub 2014 May 15.

PMID:
24830736
[PubMed - in process]
4.

Phenotypic profiling of antibiotic response signatures in Escherichia coli using Raman spectroscopy.

Athamneh AI, Alajlouni RA, Wallace RS, Seleem MN, Senger RS.

Antimicrob Agents Chemother. 2014;58(3):1302-14. doi: 10.1128/AAC.02098-13. Epub 2013 Dec 2.

PMID:
24295982
[PubMed - in process]
Free PMC Article
5.

Deriving metabolic engineering strategies from genome-scale modeling with flux ratio constraints.

Yen JY, Nazem-Bokaee H, Freedman BG, Athamneh AI, Senger RS.

Biotechnol J. 2013 May;8(5):581-94. doi: 10.1002/biot.201200234. Epub 2013 Apr 11.

PMID:
23460591
[PubMed - indexed for MEDLINE]
6.

Resolving cell composition through simple measurements, genome-scale modeling, and a genetic algorithm.

Senger RS, Nazem-Bokaee H.

Methods Mol Biol. 2013;985:85-101. doi: 10.1007/978-1-62703-299-5_5.

PMID:
23417800
[PubMed - indexed for MEDLINE]
7.

Peptide-guided surface-enhanced Raman scattering probes for localized cell composition analysis.

Athamneh AI, Senger RS.

Appl Environ Microbiol. 2012 Nov;78(21):7805-8. doi: 10.1128/AEM.02000-12. Epub 2012 Aug 24.

PMID:
22923413
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Are we ready for genome-scale modeling in plants?

Collakova E, Yen JY, Senger RS.

Plant Sci. 2012 Aug;191-192:53-70. doi: 10.1016/j.plantsci.2012.04.010. Epub 2012 May 3. Review.

PMID:
22682565
[PubMed - indexed for MEDLINE]
Free Article
9.

Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico.

McAnulty MJ, Yen JY, Freedman BG, Senger RS.

BMC Syst Biol. 2012 May 14;6:42. doi: 10.1186/1752-0509-6-42.

PMID:
22583864
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.

Milne CB, Eddy JA, Raju R, Ardekani S, Kim PJ, Senger RS, Jin YS, Blaschek HP, Price ND.

BMC Syst Biol. 2011 Aug 16;5:130. doi: 10.1186/1752-0509-5-130.

PMID:
21846360
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Biofuel production improvement with genome-scale models: The role of cell composition.

Senger RS.

Biotechnol J. 2010 Jul;5(7):671-85. doi: 10.1002/biot.201000007. Review.

PMID:
20540108
[PubMed - indexed for MEDLINE]
12.

Computational approaches in metabolic engineering.

Reed JL, Senger RS, Antoniewicz MR, Young JD.

J Biomed Biotechnol. 2010;2010:207414. doi: 10.1155/2010/207414. Epub 2011 Apr 7. No abstract available.

PMID:
21584279
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Microarray-based gene expression analysis as a process characterization tool to establish comparability of complex biological products: scale-up of a whole-cell immunotherapy product.

Wang M, Senger RS, Paredes C, Banik GG, Lin A, Papoutsakis ET.

Biotechnol Bioeng. 2009 Nov 1;104(4):796-808. doi: 10.1002/bit.22441.

PMID:
19591186
[PubMed - indexed for MEDLINE]
14.

Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis.

Senger RS, Papoutsakis ET.

Biotechnol Bioeng. 2008 Dec 1;101(5):1036-52. doi: 10.1002/bit.22010.

PMID:
18767192
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genome-scale model for Clostridium acetobutylicum: Part II. Development of specific proton flux states and numerically determined sub-systems.

Senger RS, Papoutsakis ET.

Biotechnol Bioeng. 2008 Dec 1;101(5):1053-71. doi: 10.1002/bit.22009.

PMID:
18767191
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The transcriptional program underlying the physiology of clostridial sporulation.

Jones SW, Paredes CJ, Tracy B, Cheng N, Sillers R, Senger RS, Papoutsakis ET.

Genome Biol. 2008;9(7):R114. doi: 10.1186/gb-2008-9-7-r114. Epub 2008 Jul 16.

PMID:
18631379
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Prediction of N-linked glycan branching patterns using artificial neural networks.

Senger RS, Karim MN.

Math Biosci. 2008 Jan;211(1):89-104. Epub 2007 Oct 30.

PMID:
18054050
[PubMed - indexed for MEDLINE]
18.

A general framework for designing and validating oligomer-based DNA microarrays and its application to Clostridium acetobutylicum.

Paredes CJ, Senger RS, Spath IS, Borden JR, Sillers R, Papoutsakis ET.

Appl Environ Microbiol. 2007 Jul;73(14):4631-8. Epub 2007 May 25.

PMID:
17526797
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Optimization of fed-batch parameters and harvest time of CHO cell cultures for a glycosylated product with multiple mechanisms of inactivation.

Senger RS, Karim MN.

Biotechnol Bioeng. 2007 Oct 1;98(2):378-90.

PMID:
17385745
[PubMed - indexed for MEDLINE]
20.

Development of a culture sub-population induction model: signaling pathways synergy and taxanes production by Taxus canadensis.

Senger RS, Phisalaphong M, Karim MN, Linden JC.

Biotechnol Prog. 2006 Nov-Dec;22(6):1671-82.

PMID:
17137317
[PubMed - indexed for MEDLINE]

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