Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 26

1.

An adaptable pentaloop defines a robust neomycin-B RNA aptamer with conditional ligand-bound structures.

Ilgu M, Fulton DB, Yennamalli RM, Lamm MH, Sen TZ, Nilsen-Hamilton M.

RNA. 2014 Jun;20(6):815-24. doi: 10.1261/rna.041145.113. Epub 2014 Apr 22.

PMID:
24757168
[PubMed - indexed for MEDLINE]
2.

Endoglucanases: insights into thermostability for biofuel applications.

Yennamalli RM, Rader AJ, Kenny AJ, Wolt JD, Sen TZ.

Biotechnol Biofuels. 2013 Sep 27;6(1):136. doi: 10.1186/1754-6834-6-136.

PMID:
24070146
[PubMed]
Free PMC Article
3.

Predicting the binding patterns of hub proteins: a study using yeast protein interaction networks.

Andorf CM, Honavar V, Sen TZ.

PLoS One. 2013;8(2):e56833. doi: 10.1371/journal.pone.0056833. Epub 2013 Feb 19.

PMID:
23431393
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Molecular simulation of fibronectin adsorption onto polyurethane surfaces.

Panos M, Sen TZ, Ahunbay MG.

Langmuir. 2012 Aug 28;28(34):12619-28. doi: 10.1021/la301546v. Epub 2012 Aug 16.

PMID:
22856639
[PubMed - indexed for MEDLINE]
5.

A rigid network of long-range contacts increases thermostability in a mutant endoglucanase.

Rader AJ, Yennamalli RM, Harter AK, Sen TZ.

J Biomol Struct Dyn. 2012;30(6):628-37. Epub 2012 Jun 26.

PMID:
22731517
[PubMed - indexed for MEDLINE]
6.

POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data.

Cannon EK, Birkett SM, Braun BL, Kodavali S, Jennewein DM, Yilmaz A, Antonescu V, Antonescu C, Harper LC, Gardiner JM, Schaeffer ML, Campbell DA, Andorf CM, Andorf D, Lisch D, Koch KE, McCarty DR, Quackenbush J, Grotewold E, Lushbough CM, Sen TZ, Lawrence CJ.

Int J Plant Genomics. 2011;2011:923035. doi: 10.1155/2011/923035. Epub 2011 Dec 27.

PMID:
22253616
[PubMed]
Free PMC Article
7.

Dynamics of endoglucanase catalytic domains: implications towards thermostability.

Yennamalli RM, Wolt JD, Sen TZ.

J Biomol Struct Dyn. 2011 Dec;29(3):509-26.

PMID:
22066537
[PubMed - indexed for MEDLINE]
8.

MaizeGDB: curation and outreach go hand-in-hand.

Schaeffer ML, Harper LC, Gardiner JM, Andorf CM, Campbell DA, Cannon EK, Sen TZ, Lawrence CJ.

Database (Oxford). 2011 May 29;2011:bar022. doi: 10.1093/database/bar022. Print 2011.

PMID:
21624896
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via video.

Harper LC, Schaeffer ML, Thistle J, Gardiner JM, Andorf CM, Campbell DA, Cannon EK, Braun BL, Birkett SM, Lawrence CJ, Sen TZ.

Database (Oxford). 2011 May 9;2011:bar016. doi: 10.1093/database/bar016. Print 2011.

PMID:
21565781
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Thermostability in endoglucanases is fold-specific.

Yennamalli RM, Rader AJ, Wolt JD, Sen TZ.

BMC Struct Biol. 2011 Feb 3;11:10. doi: 10.1186/1472-6807-11-10.

PMID:
21291533
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Choosing a genome browser for a Model Organism Database: surveying the maize community.

Sen TZ, Harper LC, Schaeffer ML, Andorf CM, Seigfried TE, Campbell DA, Lawrence CJ.

Database (Oxford). 2010 Jul 6;2010:baq007. doi: 10.1093/database/baq007.

PMID:
20627860
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps.

Andorf CM, Lawrence CJ, Harper LC, Schaeffer ML, Campbell DA, Sen TZ.

Bioinformatics. 2010 Feb 1;26(3):434-6. doi: 10.1093/bioinformatics/btp556.

PMID:
20124413
[PubMed - indexed for MEDLINE]
Free Article
13.

MaizeGDB becomes 'sequence-centric'.

Sen TZ, Andorf CM, Schaeffer ML, Harper LC, Sparks ME, Duvick J, Brendel VP, Cannon E, Campbell DA, Lawrence CJ.

Database (Oxford). 2009;2009:bap020. doi: 10.1093/database/bap020. Epub 2009 Dec 7.

PMID:
21847242
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The ribosome structure controls and directs mRNA entry, translocation and exit dynamics.

Kurkcuoglu O, Doruker P, Sen TZ, Kloczkowski A, Jernigan RL.

Phys Biol. 2008 Nov 24;5(4):046005. doi: 10.1088/1478-3975/5/4/046005.

PMID:
19029596
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

MaizeGDB: The maize model organism database for basic, translational, and applied research.

Lawrence CJ, Harper LC, Schaeffer ML, Sen TZ, Seigfried TE, Campbell DA.

Int J Plant Genomics. 2008;2008:496957. doi: 10.1155/2008/496957.

PMID:
18769488
[PubMed]
Free PMC Article
16.

Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA.

Sen TZ, Kloster M, Jernigan RL, Kolinski A, Bujnicki JM, Kloczkowski A.

Biophys J. 2008 Apr 1;94(7):2482-91. doi: 10.1529/biophysj.107.116046. Epub 2008 Jan 4.

PMID:
18178655
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Predicting the order in which contacts are broken during single molecule protein stretching experiments.

SuĊ‚kowska JI, Kloczkowski A, Sen TZ, Cieplak M, Jernigan RL.

Proteins. 2008 Apr;71(1):45-60.

PMID:
17932935
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The Extent of Cooperativity of Protein Motions Observed with Elastic Network Models Is Similar for Atomic and Coarser-Grained Models.

Sen TZ, Feng Y, Garcia JV, Kloczkowski A, Jernigan RL.

J Chem Theory Comput. 2006;2(3):696-704.

PMID:
17710199
[PubMed]
Free PMC Article
19.

Generation and enumeration of compact conformations on the two-dimensional triangular and three-dimensional fcc lattices.

Peto M, Sen TZ, Jernigan RL, Kloczkowski A.

J Chem Phys. 2007 Jul 28;127(4):044101.

PMID:
17672675
[PubMed - indexed for MEDLINE]
20.

Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: combining GOR V and Fragment Database Mining (FDM).

Cheng H, Sen TZ, Jernigan RL, Kloczkowski A.

Bioinformatics. 2007 Oct 1;23(19):2628-30. Epub 2007 Jul 27.

PMID:
17660202
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk