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Results: 1 to 20 of 107


Distance-based assessment of the localization of functional annotations in 3D genome reconstructions.

Capurso D, Segal MR.

BMC Genomics. 2014 Nov 18;15:992. doi: 10.1186/1471-2164-15-992.


Development of a database for translational spinal cord injury research.

Nielson JL, Guandique CF, Liu AW, Burke DA, Lash AT, Moseanko R, Hawbecker S, Strand SC, Zdunowski S, Irvine KA, Brock JH, Nout-Lomas YS, Gensel JC, Anderson KD, Segal MR, Rosenzweig ES, Magnuson DS, Whittemore SR, McTigue DM, Popovich PG, Rabchevsky AG, Scheff SW, Steward O, Courtine G, Edgerton VR, Tuszynski MH, Beattie MS, Bresnahan JC, Ferguson AR.

J Neurotrauma. 2014 Nov 1;31(21):1789-99. doi: 10.1089/neu.2014.3399. Epub 2014 Jul 31.


Reproducibility of 3D chromatin configuration reconstructions.

Segal MR, Xiong H, Capurso D, Vazquez M, Arsuaga J.

Biostatistics. 2014 Jul;15(3):442-56. doi: 10.1093/biostatistics/kxu003. Epub 2014 Feb 11.


Monocyte activation by interferon α is associated with failure to achieve a sustained virologic response after treatment for hepatitis C virus infection.

Hartigan-O'Connor DJ, Lin D, Ryan JC, Shvachko VA, Cozen ML, Segal MR, Terrault NA, Lanier LL, Manos MM, McCune JM.

J Infect Dis. 2014 May 15;209(10):1602-12. doi: 10.1093/infdis/jit801. Epub 2013 Dec 10.


13C NMR metabolomic evaluation of immediate and delayed mild hypothermia in cerebrocortical slices after oxygen-glucose deprivation.

Liu J, Segal MR, Kelly MJ, Pelton JG, Kim M, James TL, Litt L.

Anesthesiology. 2013 Nov;119(5):1120-36. doi: 10.1097/ALN.0b013e31829c2d90.


1H nuclear magnetic resonance brain metabolomics in neonatal mice after hypoxia-ischemia distinguished normothermic recovery from mild hypothermia recoveries.

Liu J, Sheldon RA, Segal MR, Kelly MJ, Pelton JG, Ferriero DM, James TL, Litt L.

Pediatr Res. 2013 Aug;74(2):170-9. doi: 10.1038/pr.2013.88. Epub 2013 May 24.


Analytical validation of a practical molecular assay prognostic of survival in nonsquamous non-small cell lung cancer.

Kratz JR, Tham PT, Mulvihill MS, Ziaei F, Ray MR, Hurst JW, Segal MR, Berryman DM, Chu W, He B, Jablons DM, Mann MJ.

Diagn Mol Pathol. 2013 Jun;22(2):65-9. doi: 10.1097/PDM.0b013e318273fb61.


Derivation of multivariate syndromic outcome metrics for consistent testing across multiple models of cervical spinal cord injury in rats.

Ferguson AR, Irvine KA, Gensel JC, Nielson JL, Lin A, Ly J, Segal MR, Ratan RR, Bresnahan JC, Beattie MS.

PLoS One. 2013;8(3):e59712. doi: 10.1371/journal.pone.0059712. Epub 2013 Mar 27.


A histone arginine methylation localizes to nucleosomes in satellite II and III DNA sequences in the human genome.

Capurso D, Xiong H, Segal MR.

BMC Genomics. 2012 Nov 15;13:630. doi: 10.1186/1471-2164-13-630.


Being 'underpowered' does not make a study unethical.

Bacchetti P, McCulloch C, Segal MR.

Stat Med. 2012 Dec 20;31(29):4138-9; author reply 4140-1. doi: 10.1002/sim.5451. Epub 2012 Jul 5. No abstract available.


Querying genomic databases: refining the connectivity map.

Segal MR, Xiong H, Bengtsson H, Bourgon R, Gentleman R.

Stat Appl Genet Mol Biol. 2012 Jan 6;11(2). pii: /j/sagmb.2012.11.issue-2/1544-6115.1715/1544-6115.1715.xml. doi: 10.2202/1544-6115.1715.


A practical molecular assay to predict survival in resected non-squamous, non-small-cell lung cancer: development and international validation studies.

Kratz JR, He J, Van Den Eeden SK, Zhu ZH, Gao W, Pham PT, Mulvihill MS, Ziaei F, Zhang H, Su B, Zhi X, Quesenberry CP, Habel LA, Deng Q, Wang Z, Zhou J, Li H, Huang MC, Yeh CC, Segal MR, Ray MR, Jones KD, Raz DJ, Xu Z, Jahan TM, Berryman D, He B, Mann MJ, Jablons DM.

Lancet. 2012 Mar 3;379(9818):823-32. doi: 10.1016/S0140-6736(11)61941-7. Epub 2012 Jan 27.


Sequence-based classification using discriminatory motif feature selection.

Xiong H, Capurso D, Sen S, Segal MR.

PLoS One. 2011;6(11):e27382. doi: 10.1371/journal.pone.0027382. Epub 2011 Nov 10.


Metabolomics of oxidative stress in recent studies of endogenous and exogenously administered intermediate metabolites.

Liu J, Litt L, Segal MR, Kelly MJ, Pelton JG, Kim M.

Int J Mol Sci. 2011;12(10):6469-501. doi: 10.3390/ijms12106469. Epub 2011 Sep 28. Review.


Clustering with exclusion zones: genomic applications.

Segal MR, Xiao Y, Huffer FW.

Biostatistics. 2011 Apr;12(2):234-46. doi: 10.1093/biostatistics/kxq066. Epub 2010 Nov 4.


Functional hot spots in human ATP-binding cassette transporter nucleotide binding domains.

Kelly L, Fukushima H, Karchin R, Gow JM, Chinn LW, Pieper U, Segal MR, Kroetz DL, Sali A.

Protein Sci. 2010 Nov;19(11):2110-21. doi: 10.1002/pro.491.


Outcome-related metabolomic patterns from 1H/31P NMR after mild hypothermia treatments of oxygen-glucose deprivation in a neonatal brain slice model of asphyxia.

Liu J, Litt L, Segal MR, Kelly MJ, Yoshihara HA, James TL.

J Cereb Blood Flow Metab. 2011 Feb;31(2):547-59. doi: 10.1038/jcbfm.2010.125. Epub 2010 Aug 18.


Regulated gene expression in cultured type II cells of adult human lung.

Ballard PL, Lee JW, Fang X, Chapin C, Allen L, Segal MR, Fischer H, Illek B, Gonzales LW, Kolla V, Matthay MA.

Am J Physiol Lung Cell Mol Physiol. 2010 Jul;299(1):L36-50. doi: 10.1152/ajplung.00427.2009. Epub 2010 Apr 9.


Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome.

Cox MJ, Huang YJ, Fujimura KE, Liu JT, McKean M, Boushey HA, Segal MR, Brodie EL, Cabana MD, Lynch SV.

PLoS One. 2010 Jan 18;5(1):e8745. doi: 10.1371/journal.pone.0008745.


Differentiation of recurrent glioblastoma multiforme from radiation necrosis after external beam radiation therapy with dynamic susceptibility-weighted contrast-enhanced perfusion MR imaging.

Barajas RF Jr, Chang JS, Segal MR, Parsa AT, McDermott MW, Berger MS, Cha S.

Radiology. 2009 Nov;253(2):486-96. doi: 10.1148/radiol.2532090007. Epub 2009 Sep 29.

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