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Results: 19

1.

Reconstructible phylogenetic networks: do not distinguish the indistinguishable.

Pardi F, Scornavacca C.

PLoS Comput Biol. 2015 Apr 7;11(4):e1004135. doi: 10.1371/journal.pcbi.1004135. eCollection 2015 Apr.

2.

Exploring the space of gene/species reconciliations with transfers.

Chan YB, Ranwez V, Scornavacca C.

J Math Biol. 2014 Dec 14. [Epub ahead of print]

PMID:
25502987
3.

Joint amalgamation of most parsimonious reconciled gene trees.

Scornavacca C, Jacox E, Szöllősi GJ.

Bioinformatics. 2015 Mar 15;31(6):841-8. doi: 10.1093/bioinformatics/btu728. Epub 2014 Nov 6.

4.

A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees.

van Iersel L, Kelk S, Lekić N, Scornavacca C.

BMC Bioinformatics. 2014 May 5;15:127. doi: 10.1186/1471-2105-15-127.

5.

OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals.

Douzery EJ, Scornavacca C, Romiguier J, Belkhir K, Galtier N, Delsuc F, Ranwez V.

Mol Biol Evol. 2014 Jul;31(7):1923-8. doi: 10.1093/molbev/msu132. Epub 2014 Apr 9.

PMID:
24723423
6.

Reconciliation-based detection of co-evolving gene families.

Chan YB, Ranwez V, Scornavacca C.

BMC Bioinformatics. 2013 Nov 20;14:332. doi: 10.1186/1471-2105-14-332.

7.

Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods.

Nguyen TH, Ranwez V, Berry V, Scornavacca C.

PLoS One. 2013 Oct 4;8(10):e73667. doi: 10.1371/journal.pone.0073667. eCollection 2013.

8.

Bio++: efficient extensible libraries and tools for computational molecular evolution.

Guéguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K, Dutheil JY.

Mol Biol Evol. 2013 Aug;30(8):1745-50. doi: 10.1093/molbev/mst097. Epub 2013 May 21.

9.

Representing a set of reconciliations in a compact way.

Scornavacca C, Paprotny W, Berry V, Ranwez V.

J Bioinform Comput Biol. 2013 Apr;11(2):1250025. doi: 10.1142/S0219720012500254. Epub 2012 Dec 28.

PMID:
23600816
10.

A first step toward computing all hybridization networks for two rooted binary phylogenetic trees.

Scornavacca C, Linz S, Albrecht B.

J Comput Biol. 2012 Nov;19(11):1227-42. doi: 10.1089/cmb.2012.0192.

PMID:
23134319
11.

Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks.

Huson DH, Scornavacca C.

Syst Biol. 2012 Dec 1;61(6):1061-7. doi: 10.1093/sysbio/sys062. Epub 2012 Jul 10.

PMID:
22780991
12.

Fast computation of minimum hybridization networks.

Albrecht B, Scornavacca C, Cenci A, Huson DH.

Bioinformatics. 2012 Jan 15;28(2):191-7. doi: 10.1093/bioinformatics/btr618. Epub 2011 Nov 9.

13.

On the elusiveness of clusters.

Kelk SM, Scornavacca C, van Iersel L.

IEEE/ACM Trans Comput Biol Bioinform. 2012;9(2):517-34. doi: 10.1109/TCBB.2011.128. Epub 2011 Sep 27.

PMID:
21968961
14.

Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae).

Escobar JS, Scornavacca C, Cenci A, Guilhaumon C, Santoni S, Douzery EJ, Ranwez V, Glémin S, David J.

BMC Evol Biol. 2011 Jun 24;11:181. doi: 10.1186/1471-2148-11-181.

15.

Tanglegrams for rooted phylogenetic trees and networks.

Scornavacca C, Zickmann F, Huson DH.

Bioinformatics. 2011 Jul 1;27(13):i248-56. doi: 10.1093/bioinformatics/btr210.

16.

A survey of combinatorial methods for phylogenetic networks.

Huson DH, Scornavacca C.

Genome Biol Evol. 2011;3:23-35. doi: 10.1093/gbe/evq077. Epub 2010 Nov 15.

17.

PhySIC_IST: cleaning source trees to infer more informative supertrees.

Scornavacca C, Berry V, Lefort V, Douzery EJ, Ranwez V.

BMC Bioinformatics. 2008 Oct 4;9:413. doi: 10.1186/1471-2105-9-413.

18.

Exploring the solution space of sorting by reversals, with experiments and an application to evolution.

Braga MD, Sagot MF, Scornavacca C, Tannier E.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Jul-Sep;5(3):348-56. doi: 10.1109/TCBB.2008.16.

PMID:
18670039
19.

PhySIC: a veto supertree method with desirable properties.

Ranwez V, Berry V, Criscuolo A, Fabre PH, Guillemot S, Scornavacca C, Douzery EJ.

Syst Biol. 2007 Oct;56(5):798-817.

PMID:
17918032
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