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Results: 16

1.

A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees.

Iersel Lv, Kelk S, Lekić N, Scornavacca C.

BMC Bioinformatics. 2014 May 5;15:127. doi: 10.1186/1471-2105-15-127.

PMID:
24884964
[PubMed - in process]
Free PMC Article
2.

OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals.

Douzery EJ, Scornavacca C, Romiguier J, Belkhir K, Galtier N, Delsuc F, Ranwez V.

Mol Biol Evol. 2014 Jul;31(7):1923-8. doi: 10.1093/molbev/msu132. Epub 2014 Apr 9.

PMID:
24723423
[PubMed - in process]
3.

Reconciliation-based detection of co-evolving gene families.

Chan YB, Ranwez V, Scornavacca C.

BMC Bioinformatics. 2013 Nov 20;14:332. doi: 10.1186/1471-2105-14-332.

PMID:
24252193
[PubMed - indexed for MEDLINE]
Free Article
4.

Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods.

Nguyen TH, Ranwez V, Berry V, Scornavacca C.

PLoS One. 2013 Oct 4;8(10):e73667. doi: 10.1371/journal.pone.0073667. eCollection 2013.

PMID:
24124449
[PubMed - in process]
Free PMC Article
5.

Bio++: efficient extensible libraries and tools for computational molecular evolution.

Guéguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K, Dutheil JY.

Mol Biol Evol. 2013 Aug;30(8):1745-50. doi: 10.1093/molbev/mst097. Epub 2013 May 21.

PMID:
23699471
[PubMed - indexed for MEDLINE]
6.

Representing a set of reconciliations in a compact way.

Scornavacca C, Paprotny W, Berry V, Ranwez V.

J Bioinform Comput Biol. 2013 Apr;11(2):1250025. doi: 10.1142/S0219720012500254. Epub 2012 Dec 28.

PMID:
23600816
[PubMed - indexed for MEDLINE]
7.

A first step toward computing all hybridization networks for two rooted binary phylogenetic trees.

Scornavacca C, Linz S, Albrecht B.

J Comput Biol. 2012 Nov;19(11):1227-42. doi: 10.1089/cmb.2012.0192.

PMID:
23134319
[PubMed - indexed for MEDLINE]
8.

Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks.

Huson DH, Scornavacca C.

Syst Biol. 2012 Dec 1;61(6):1061-7. doi: 10.1093/sysbio/sys062. Epub 2012 Jul 10.

PMID:
22780991
[PubMed - indexed for MEDLINE]
9.

Fast computation of minimum hybridization networks.

Albrecht B, Scornavacca C, Cenci A, Huson DH.

Bioinformatics. 2012 Jan 15;28(2):191-7. doi: 10.1093/bioinformatics/btr618. Epub 2011 Nov 9.

PMID:
22072387
[PubMed - indexed for MEDLINE]
Free Article
10.

On the elusiveness of clusters.

Kelk SM, Scornavacca C, van Iersel L.

IEEE/ACM Trans Comput Biol Bioinform. 2012;9(2):517-34. doi: 10.1109/TCBB.2011.128. Epub 2011 Sep 27.

PMID:
21968961
[PubMed - indexed for MEDLINE]
11.

Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae).

Escobar JS, Scornavacca C, Cenci A, Guilhaumon C, Santoni S, Douzery EJ, Ranwez V, Glémin S, David J.

BMC Evol Biol. 2011 Jun 24;11:181. doi: 10.1186/1471-2148-11-181.

PMID:
21702931
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Tanglegrams for rooted phylogenetic trees and networks.

Scornavacca C, Zickmann F, Huson DH.

Bioinformatics. 2011 Jul 1;27(13):i248-56. doi: 10.1093/bioinformatics/btr210.

PMID:
21685078
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A survey of combinatorial methods for phylogenetic networks.

Huson DH, Scornavacca C.

Genome Biol Evol. 2011;3:23-35. doi: 10.1093/gbe/evq077. Epub 2010 Nov 15.

PMID:
21081312
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

PhySIC_IST: cleaning source trees to infer more informative supertrees.

Scornavacca C, Berry V, Lefort V, Douzery EJ, Ranwez V.

BMC Bioinformatics. 2008 Oct 4;9:413. doi: 10.1186/1471-2105-9-413.

PMID:
18834542
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Exploring the solution space of sorting by reversals, with experiments and an application to evolution.

Braga MD, Sagot MF, Scornavacca C, Tannier E.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Jul-Sep;5(3):348-56. doi: 10.1109/TCBB.2008.16.

PMID:
18670039
[PubMed - indexed for MEDLINE]
16.

PhySIC: a veto supertree method with desirable properties.

Ranwez V, Berry V, Criscuolo A, Fabre PH, Guillemot S, Scornavacca C, Douzery EJ.

Syst Biol. 2007 Oct;56(5):798-817.

PMID:
17918032
[PubMed - indexed for MEDLINE]

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