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Results: 19

1.

Reconstructing each cell's genome within complex microbial communities-dream or reality?

Clingenpeel S, Clum A, Schwientek P, Rinke C, Woyke T.

Front Microbiol. 2015 Jan 8;5:771. doi: 10.3389/fmicb.2014.00771. eCollection 2014.

2.

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics.

Roux S, Hawley AK, Torres Beltran M, Scofield M, Schwientek P, Stepanauskas R, Woyke T, Hallam SJ, Sullivan MB.

Elife. 2014 Aug 29;3:e03125. doi: 10.7554/eLife.03125.

3.

Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage.

Ghylin TW, Garcia SL, Moya F, Oyserman BO, Schwientek P, Forest KT, Mutschler J, Dwulit-Smith J, Chan LK, Martinez-Garcia M, Sczyrba A, Stepanauskas R, Grossart HP, Woyke T, Warnecke F, Malmstrom R, Bertilsson S, McMahon KD.

ISME J. 2014 Dec;8(12):2503-16. doi: 10.1038/ismej.2014.135. Epub 2014 Aug 5.

PMID:
25093637
4.

Effects of sample treatments on genome recovery via single-cell genomics.

Clingenpeel S, Schwientek P, Hugenholtz P, Woyke T.

ISME J. 2014 Dec;8(12):2546-9. doi: 10.1038/ismej.2014.92. Epub 2014 Jun 13.

PMID:
24926860
5.

Stop codon reassignments in the wild.

Ivanova NN, Schwientek P, Tripp HJ, Rinke C, Pati A, Huntemann M, Visel A, Woyke T, Kyrpides NC, Rubin EM.

Science. 2014 May 23;344(6186):909-13. doi: 10.1126/science.1250691.

PMID:
24855270
6.

Diversity and genomic insights into the uncultured Chloroflexi from the human microbiota.

Campbell AG, Schwientek P, Vishnivetskaya T, Woyke T, Levy S, Beall CJ, Griffen A, Leys E, Podar M.

Environ Microbiol. 2014 Sep;16(9):2635-43. doi: 10.1111/1462-2920.12461. Epub 2014 Apr 17.

PMID:
24738594
7.

Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts.

Schwientek P, Neshat A, Kalinowski J, Klein A, Rückert C, Schneiker-Bekel S, Wendler S, Stoye J, Pühler A.

J Biotechnol. 2014 Nov 20;190:85-95. doi: 10.1016/j.jbiotec.2014.03.013. Epub 2014 Mar 15.

PMID:
24642337
8.

The candidate phylum Poribacteria by single-cell genomics: new insights into phylogeny, cell-compartmentation, eukaryote-like repeat proteins, and other genomic features.

Kamke J, Rinke C, Schwientek P, Mavromatis K, Ivanova N, Sczyrba A, Woyke T, Hentschel U.

PLoS One. 2014 Jan 31;9(1):e87353. doi: 10.1371/journal.pone.0087353. eCollection 2014.

9.

Insights into the phylogeny and coding potential of microbial dark matter.

Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, Eisen JA, Hallam SJ, Kyrpides NC, Stepanauskas R, Rubin EM, Hugenholtz P, Woyke T.

Nature. 2013 Jul 25;499(7459):431-7. doi: 10.1038/nature12352. Epub 2013 Jul 14.

PMID:
23851394
10.

Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges.

Kamke J, Sczyrba A, Ivanova N, Schwientek P, Rinke C, Mavromatis K, Woyke T, Hentschel U.

ISME J. 2013 Dec;7(12):2287-300. doi: 10.1038/ismej.2013.111. Epub 2013 Jul 11.

11.

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean.

Swan BK, Tupper B, Sczyrba A, Lauro FM, Martinez-Garcia M, González JM, Luo H, Wright JJ, Landry ZC, Hanson NW, Thompson BP, Poulton NJ, Schwientek P, Acinas SG, Giovannoni SJ, Moran MA, Hallam SJ, Cavicchioli R, Woyke T, Stepanauskas R.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11463-8. doi: 10.1073/pnas.1304246110. Epub 2013 Jun 25.

12.

Multiple single-cell genomes provide insight into functions of uncultured Deltaproteobacteria in the human oral cavity.

Campbell AG, Campbell JH, Schwientek P, Woyke T, Sczyrba A, Allman S, Beall CJ, Griffen A, Leys E, Podar M.

PLoS One. 2013;8(3):e59361. doi: 10.1371/journal.pone.0059361. Epub 2013 Mar 26.

13.

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota.

Campbell JH, O'Donoghue P, Campbell AG, Schwientek P, Sczyrba A, Woyke T, Söll D, Podar M.

Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5540-5. doi: 10.1073/pnas.1303090110. Epub 2013 Mar 18.

14.

Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media.

Schwientek P, Wendler S, Neshat A, Eirich C, Rückert C, Klein A, Wehmeier UF, Kalinowski J, Stoye J, Pühler A.

J Biotechnol. 2013 Aug 20;167(2):166-77. doi: 10.1016/j.jbiotec.2012.10.019. Epub 2012 Nov 8.

PMID:
23142701
15.

The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism.

Wendler S, Hürtgen D, Kalinowski J, Klein A, Niehaus K, Schulte F, Schwientek P, Wehlmann H, Wehmeier UF, Pühler A.

J Biotechnol. 2013 Aug 20;167(2):178-89. doi: 10.1016/j.jbiotec.2012.08.011. Epub 2012 Aug 31.

PMID:
22944206
16.

The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110.

Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Pühler A.

BMC Genomics. 2012 Mar 23;13:112. doi: 10.1186/1471-2164-13-112.

17.

Myocardial transcriptome analysis of human arrhythmogenic right ventricular cardiomyopathy.

Gaertner A, Schwientek P, Ellinghaus P, Summer H, Golz S, Kassner A, Schulz U, Gummert J, Milting H.

Physiol Genomics. 2012 Jan 18;44(1):99-109. doi: 10.1152/physiolgenomics.00094.2011. Epub 2011 Nov 15. Erratum in: Physiol Genomics. 2012 Feb;44(4):281.

18.

Sequencing of high G+C microbial genomes using the ultrafast pyrosequencing technology.

Schwientek P, Szczepanowski R, Rückert C, Stoye J, Pühler A.

J Biotechnol. 2011 Aug 20;155(1):68-77. doi: 10.1016/j.jbiotec.2011.04.010. Epub 2011 Apr 23.

PMID:
21536083
19.

Global gene expression analysis in nonfailing and failing myocardium pre- and postpulsatile and nonpulsatile ventricular assist device support.

Schwientek P, Ellinghaus P, Steppan S, D'Urso D, Seewald M, Kassner A, Cebulla R, Schulte-Eistrup S, Morshuis M, Röfe D, El Banayosy A, Körfer R, Milting H.

Physiol Genomics. 2010 Aug;42(3):397-405. doi: 10.1152/physiolgenomics.00030.2010. Epub 2010 May 11.

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