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Results: 1 to 20 of 67

1.

Development of IRAP- and REMAP-derived SCAR markers for marker-assisted selection of the stripe rust resistance gene Yr15 derived from wild emmer wheat.

Abdollahi Mandoulakani B, Yaniv E, Kalendar R, Raats D, Bariana HS, Bihamta MR, Schulman AH.

Theor Appl Genet. 2015 Feb;128(2):211-9. doi: 10.1007/s00122-014-2422-8. Epub 2014 Nov 12.

PMID:
25388968
2.

Analysis of CACTA transposases reveals intron loss as major factor influencing their exon/intron structure in monocotyledonous and eudicotyledonous hosts.

Buchmann JP, Löytynoja A, Wicker T, Schulman AH.

Mob DNA. 2014 Sep 1;5:24. doi: 10.1186/1759-8753-5-24. eCollection 2014.

3.

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera.

Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, de Jong MA, Duplouy A, Smolander OP, Vogel H, McCoy RC, Qian K, Chong WS, Zhang Q, Ahmad F, Haukka JK, Joshi A, Salojärvi J, Wheat CW, Grosse-Wilde E, Hughes D, Katainen R, Pitkänen E, Ylinen J, Waterhouse RM, Turunen M, Vähärautio A, Ojanen SP, Schulman AH, Taipale M, Lawson D, Ukkonen E, Mäkinen V, Goldsmith MR, Holm L, Auvinen P, Frilander MJ, Hanski I.

Nat Commun. 2014 Sep 5;5:4737. doi: 10.1038/ncomms5737.

4.

The Tvv1 retrotransposon family is conserved between plant genomes separated by over 100 million years.

Moisy C, Schulman AH, Kalendar R, Buchmann JP, Pelsy F.

Theor Appl Genet. 2014 May;127(5):1223-35. doi: 10.1007/s00122-014-2293-z. Epub 2014 Mar 4.

PMID:
24590356
5.

Transposon-based tagging: IRAP, REMAP, and iPBS.

Kalendar R, Schulman AH.

Methods Mol Biol. 2014;1115:233-55. doi: 10.1007/978-1-62703-767-9_12.

PMID:
24415478
6.

FastPCR software for PCR, in silico PCR, and oligonucleotide assembly and analysis.

Kalendar R, Lee D, Schulman AH.

Methods Mol Biol. 2014;1116:271-302. doi: 10.1007/978-1-62703-764-8_18.

PMID:
24395370
7.

Retrotransposon replication in plants.

Schulman AH.

Curr Opin Virol. 2013 Dec;3(6):604-14. doi: 10.1016/j.coviro.2013.08.009. Epub 2013 Sep 12. Review.

PMID:
24035277
8.

Retrotransposon BARE displays strong tissue-specific differences in expression.

Jääskeläinen M, Chang W, Moisy C, Schulman AH.

New Phytol. 2013 Dec;200(4):1000-8. doi: 10.1111/nph.12470. Epub 2013 Sep 6.

PMID:
24033286
9.

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Muñoz-Amatriaín M, Close TJ, Wise RP, Schulman AH, Himmelbach A, Mayer KF, Scholz U, Poland JA, Stein N, Waugh R.

Plant J. 2013 Nov;76(4):718-27. doi: 10.1111/tpj.12319. Epub 2013 Oct 10.

10.

BARE retrotransposons are translated and replicated via distinct RNA pools.

Chang W, Jääskeläinen M, Li SP, Schulman AH.

PLoS One. 2013 Aug 6;8(8):e72270. doi: 10.1371/journal.pone.0072270. Print 2013.

11.

Acute social stress increases biochemical and self report markers of stress without altering spatial learning in humans.

Klopp C, Garcia C, Schulman AH, Ward CP, Tartar JL.

Neuro Endocrinol Lett. 2012;33(4):425-30.

PMID:
22936252
12.

Differential effects of mild chronic stress on cortisol and S-IgA responses to an acute stressor.

Viena TD, Banks JB, Barbu IM, Schulman AH, Tartar JL.

Biol Psychol. 2012 Oct;91(2):307-11. doi: 10.1016/j.biopsycho.2012.08.003. Epub 2012 Aug 13.

PMID:
22910371
13.

The application of LTR retrotransposons as molecular markers in plants.

Schulman AH, Flavell AJ, Paux E, Ellis TH.

Methods Mol Biol. 2012;859:115-53. doi: 10.1007/978-1-61779-603-6_7.

PMID:
22367869
14.

Ancient diversity of splicing motifs and protein surfaces in the wild emmer wheat (Triticum dicoccoides) LR10 coiled coil (CC) and leucine-rich repeat (LRR) domains.

Sela H, Spiridon LN, Petrescu AJ, Akerman M, Mandel-Gutfreund Y, Nevo E, Loutre C, Keller B, Schulman AH, Fahima T.

Mol Plant Pathol. 2012 Apr;13(3):276-87. doi: 10.1111/j.1364-3703.2011.00744.x. Epub 2011 Sep 23.

PMID:
21952112
15.

Java web tools for PCR, in silico PCR, and oligonucleotide assembly and analysis.

Kalendar R, Lee D, Schulman AH.

Genomics. 2011 Aug;98(2):137-44. doi: 10.1016/j.ygeno.2011.04.009. Epub 2011 May 3.

16.

Genetic diversity of cultivated flax (Linum usitatissimum L.) germplasm assessed by retrotransposon-based markers.

Smýkal P, Bačová-Kerteszová N, Kalendar R, Corander J, Schulman AH, Pavelek M.

Theor Appl Genet. 2011 May;122(7):1385-97. doi: 10.1007/s00122-011-1539-2. Epub 2011 Feb 4.

PMID:
21293839
17.

A doubled haploid rye linkage map with a QTL affecting α-amylase activity.

Tenhola-Roininen T, Kalendar R, Schulman AH, Tanhuanpää P.

J Appl Genet. 2011 Aug;52(3):299-304. doi: 10.1007/s13353-011-0029-1. Epub 2011 Feb 1.

PMID:
21286900
18.

Analysis of plant diversity with retrotransposon-based molecular markers.

Kalendar R, Flavell AJ, Ellis TH, Sjakste T, Moisy C, Schulman AH.

Heredity (Edinb). 2011 Apr;106(4):520-30. doi: 10.1038/hdy.2010.93. Epub 2010 Aug 4. Review.

19.

iPBS: a universal method for DNA fingerprinting and retrotransposon isolation.

Kalendar R, Antonius K, Smýkal P, Schulman AH.

Theor Appl Genet. 2010 Nov;121(8):1419-30. doi: 10.1007/s00122-010-1398-2. Epub 2010 Jul 10.

PMID:
20623102
20.

Transposable elements in a marginal plant population: temporal fluctuations provide new insights into genome evolution of wild diploid wheat.

Belyayev A, Kalendar R, Brodsky L, Nevo E, Schulman AH, Raskina O.

Mob DNA. 2010 Feb 1;1(1):6. doi: 10.1186/1759-8753-1-6.

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