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Results: 16

1.

Identification of estrogen responsive genes using esophageal squamous cell carcinoma (ESCC) as a model.

Essack M, MacPherson CR, Schmeier S, Bajic VB.

BMC Syst Biol. 2012 Oct 26;6:135. doi: 10.1186/1752-0509-6-135.

PMID:
23101584
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Network analysis of microRNAs and their regulation in human ovarian cancer.

Schmeier S, Schaefer U, Essack M, Bajic VB.

BMC Syst Biol. 2011 Nov 3;5:183. doi: 10.1186/1752-0509-5-183.

PMID:
22050994
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

In Silico discovery of transcription factors as potential diagnostic biomarkers of ovarian cancer.

Kaur M, MacPherson CR, Schmeier S, Narasimhan K, Choolani M, Bajic VB.

BMC Syst Biol. 2011 Sep 19;5:144. doi: 10.1186/1752-0509-5-144.

PMID:
21923952
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Simplified method to predict mutual interactions of human transcription factors based on their primary structure.

Schmeier S, Jankovic B, Bajic VB.

PLoS One. 2011;6(7):e21887. doi: 10.1371/journal.pone.0021887. Epub 2011 Jul 5.

PMID:
21750739
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

dPORE-miRNA: polymorphic regulation of microRNA genes.

Schmeier S, Schaefer U, MacPherson CR, Bajic VB.

PLoS One. 2011 Feb 4;6(2):e16657. doi: 10.1371/journal.pone.0016657.

PMID:
21326606
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Text mining for systems modeling.

Kowald A, Schmeier S.

Methods Mol Biol. 2011;696:305-18. doi: 10.1007/978-1-60761-987-1_19.

PMID:
21063956
[PubMed - indexed for MEDLINE]
7.

TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins.

Schaefer U, Schmeier S, Bajic VB.

Nucleic Acids Res. 2011 Jan;39(Database issue):D106-10. doi: 10.1093/nar/gkq945. Epub 2010 Oct 21.

PMID:
20965969
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

DDPC: Dragon Database of Genes associated with Prostate Cancer.

Maqungo M, Kaur M, Kwofie SK, Radovanovic A, Schaefer U, Schmeier S, Oppon E, Christoffels A, Bajic VB.

Nucleic Acids Res. 2011 Jan;39(Database issue):D980-5. doi: 10.1093/nar/gkq849. Epub 2010 Sep 29.

PMID:
20880996
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

An atlas of combinatorial transcriptional regulation in mouse and man.

Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, Akalin A, Schmeier S, Kanamori-Katayama M, Bertin N, Carninci P, Daub CO, Forrest AR, Gough J, Grimmond S, Han JH, Hashimoto T, Hide W, Hofmann O, Kamburov A, Kaur M, Kawaji H, Kubosaki A, Lassmann T, van Nimwegen E, MacPherson CR, Ogawa C, Radovanovic A, Schwartz A, Teasdale RD, Tegnér J, Lenhard B, Teichmann SA, Arakawa T, Ninomiya N, Murakami K, Tagami M, Fukuda S, Imamura K, Kai C, Ishihara R, Kitazume Y, Kawai J, Hume DA, Ideker T, Hayashizaki Y.

Cell. 2010 Mar 5;140(5):744-52. doi: 10.1016/j.cell.2010.01.044. Erratum in: Cell. 2010 Apr 16;141(2):369. Kamburov, Atanas [added]; Kaur, Mandeep [added]; MacPherson, Cameron Ross [added]; Radovanovic, Aleksandar [added]; Schwartz, Ariel [added].

PMID:
20211142
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation.

Schmeier S, MacPherson CR, Essack M, Kaur M, Schaefer U, Suzuki H, Hayashizaki Y, Bajic VB.

BMC Genomics. 2009 Dec 10;10:595. doi: 10.1186/1471-2164-10-595.

PMID:
20003307
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

DDEC: Dragon database of genes implicated in esophageal cancer.

Essack M, Radovanovic A, Schaefer U, Schmeier S, Seshadri SV, Christoffels A, Kaur M, Bajic VB.

BMC Cancer. 2009 Jul 6;9:219. doi: 10.1186/1471-2407-9-219.

PMID:
19580656
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

FANTOM Consortium, Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, Kanamori-Katayama M, Kubosaki A, Akalin A, Ando Y, Arner E, Asada M, Asahara H, Bailey T, Bajic VB, Bauer D, Beckhouse AG, Bertin N, Björkegren J, Brombacher F, Bulger E, Chalk AM, Chiba J, Cloonan N, Dawe A, Dostie J, Engström PG, Essack M, Faulkner GJ, Fink JL, Fredman D, Fujimori K, Furuno M, Gojobori T, Gough J, Grimmond SM, Gustafsson M, Hashimoto M, Hashimoto T, Hatakeyama M, Heinzel S, Hide W, Hofmann O, Hörnquist M, Huminiecki L, Ikeo K, Imamoto N, Inoue S, Inoue Y, Ishihara R, Iwayanagi T, Jacobsen A, Kaur M, Kawaji H, Kerr MC, Kimura R, Kimura S, Kimura Y, Kitano H, Koga H, Kojima T, Kondo S, Konno T, Krogh A, Kruger A, Kumar A, Lenhard B, Lennartsson A, Lindow M, Lizio M, Macpherson C, Maeda N, Maher CA, Maqungo M, Mar J, Matigian NA, Matsuda H, Mattick JS, Meier S, Miyamoto S, Miyamoto-Sato E, Nakabayashi K, Nakachi Y, Nakano M, Nygaard S, Okayama T, Okazaki Y, Okuda-Yabukami H, Orlando V, Otomo J, Pachkov M, Petrovsky N, Plessy C, Quackenbush J, Radovanovic A, Rehli M, Saito R, Sandelin A, Schmeier S, Schönbach C, Schwartz AS, Semple CA, Sera M, Severin J, Shirahige K, Simons C, St Laurent G, Suzuki M, Suzuki T, Sweet MJ, Taft RJ, Takeda S, Takenaka Y, Tan K, Taylor MS, Teasdale RD, Tegnér J, Teichmann S, Valen E, Wahlestedt C, Waki K, Waterhouse A, Wells CA, Winther O, Wu L, Yamaguchi K, Yanagawa H, Yasuda J, Zavolan M, Hume DA; Riken Omics Science Center, Arakawa T, Fukuda S, Imamura K, Kai C, Kaiho A, Kawashima T, Kawazu C, Kitazume Y, Kojima M, Miura H, Murakami K, Murata M, Ninomiya N, Nishiyori H, Noma S, Ogawa C, Sano T, Simon C, Tagami M, Takahashi Y, Kawai J, Hayashizaki Y.

Nat Genet. 2009 May;41(5):553-62. doi: 10.1038/ng.375. Epub 2009 Apr 19.

PMID:
19377474
[PubMed - indexed for MEDLINE]
13.

Prioritizing genes of potential relevance to diseases affected by sex hormones: an example of myasthenia gravis.

Kaur M, Schmeier S, MacPherson CR, Hofmann O, Hide WA, Taylor S, Willcox N, Bajic VB.

BMC Genomics. 2008 Oct 13;9:481. doi: 10.1186/1471-2164-9-481.

PMID:
18851734
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Database for exploration of functional context of genes implicated in ovarian cancer.

Kaur M, Radovanovic A, Essack M, Schaefer U, Maqungo M, Kibler T, Schmeier S, Christoffels A, Narasimhan K, Choolani M, Bajic VB.

Nucleic Acids Res. 2009 Jan;37(Database issue):D820-3. doi: 10.1093/nar/gkn593. Epub 2008 Sep 12.

PMID:
18790805
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

MACAT--microarray chromosome analysis tool.

Toedling J, Schmeier S, Heinig M, Georgi B, Roepcke S.

Bioinformatics. 2005 May 1;21(9):2112-3. Epub 2004 Nov 30.

PMID:
15572464
[PubMed - indexed for MEDLINE]
Free Article
16.

Finding kinetic parameters using text mining.

Hakenberg J, Schmeier S, Kowald A, Klipp E, Leser U.

OMICS. 2004 Summer;8(2):131-52.

PMID:
15268772
[PubMed - indexed for MEDLINE]

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