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Antibiotic-Induced Alterations of the Murine Gut Microbiota and Subsequent Effects on Colonization Resistance against Clostridium difficile.

Schubert AM, Sinani H, Schloss PD.

MBio. 2015 Jul 14;6(4). pii: e00974-15. doi: 10.1128/mBio.00974-15.


The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation.

Carmody LA, Zhao J, Kalikin LM, LeBar W, Simon RH, Venkataraman A, Schmidt TM, Abdo Z, Schloss PD, LiPuma JJ.

Microbiome. 2015 Apr 1;3:12. doi: 10.1186/s40168-015-0074-9. eCollection 2015.


Dynamics and establishment of Clostridium difficile infection in the murine gastrointestinal tract.

Koenigsknecht MJ, Theriot CM, Bergin IL, Schumacher CA, Schloss PD, Young VB.

Infect Immun. 2015 Mar;83(3):934-41. doi: 10.1128/IAI.02768-14. Epub 2014 Dec 22.


Low prevalence of Clostridium septicum fecal carriage in an adult population.

Kopliku FA, Schubert AM, Mogle J, Schloss PD, Young VB, Aronoff DM.

Anaerobe. 2015 Apr;32:34-6. doi: 10.1016/j.anaerobe.2014.12.001. Epub 2014 Dec 3.


Intra- and interindividual variations mask interspecies variation in the microbiota of sympatric peromyscus populations.

Baxter NT, Wan JJ, Schubert AM, Jenior ML, Myers P, Schloss PD.

Appl Environ Microbiol. 2015 Jan;81(1):396-404. doi: 10.1128/AEM.02303-14. Epub 2014 Oct 31.


Microbiology: An integrated view of the skin microbiome.

Schloss PD.

Nature. 2014 Oct 2;514(7520):44-5. doi: 10.1038/514044a. No abstract available.


The human gut microbiome as a screening tool for colorectal cancer.

Zackular JP, Rogers MA, Ruffin MT 4th, Schloss PD.

Cancer Prev Res (Phila). 2014 Nov;7(11):1112-21. doi: 10.1158/1940-6207.CAPR-14-0129. Epub 2014 Aug 7.


The dynamics of a family's gut microbiota reveal variations on a theme.

Schloss PD, Iverson KD, Petrosino JF, Schloss SJ.

Microbiome. 2014 Jul 21;2:25. doi: 10.1186/2049-2618-2-25. eCollection 2014.


Structure of the gut microbiome following colonization with human feces determines colonic tumor burden.

Baxter NT, Zackular JP, Chen GY, Schloss PD.

Microbiome. 2014 Jun 17;2:20. doi: 10.1186/2049-2618-2-20. eCollection 2014.


Microbiome data distinguish patients with Clostridium difficile infection and non-C. difficile-associated diarrhea from healthy controls.

Schubert AM, Rogers MA, Ring C, Mogle J, Petrosino JP, Young VB, Aronoff DM, Schloss PD.

MBio. 2014 May 6;5(3):e01021-14. doi: 10.1128/mBio.01021-14.


Dynamics and associations of microbial community types across the human body.

Ding T, Schloss PD.

Nature. 2014 May 15;509(7500):357-60. doi: 10.1038/nature13178. Epub 2014 Apr 16.


Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis.

Young VB, Raffals LH, Huse SM, Vital M, Dai D, Schloss PD, Brulc JM, Antonopoulos DA, Arrieta RL, Kwon JH, Reddy KG, Hubert NA, Grim SL, Vineis JH, Dalal S, Morrison HG, Eren AM, Meyer F, Schmidt TM, Tiedje JM, Chang EB, Sogin ML.

Microbiome. 2013 Mar 4;1(1):9. doi: 10.1186/2049-2618-1-9.


Mathematical modeling of primary succession of murine intestinal microbiota.

Marino S, Baxter NT, Huffnagle GB, Petrosino JF, Schloss PD.

Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):439-44. doi: 10.1073/pnas.1311322111. Epub 2013 Dec 23.


The gut microbiome modulates colon tumorigenesis.

Zackular JP, Baxter NT, Iverson KD, Sadler WD, Petrosino JF, Chen GY, Schloss PD.

MBio. 2013 Nov 5;4(6):e00692-13. doi: 10.1128/mBio.00692-13.


Changes in cystic fibrosis airway microbiota at pulmonary exacerbation.

Carmody LA, Zhao J, Schloss PD, Petrosino JF, Murray S, Young VB, Li JZ, LiPuma JJ.

Ann Am Thorac Soc. 2013 Jun;10(3):179-87. doi: 10.1513/AnnalsATS.201211-107OC.


Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD.

Appl Environ Microbiol. 2013 Sep;79(17):5112-20. doi: 10.1128/AEM.01043-13. Epub 2013 Jun 21.


Comparison of the respiratory microbiome in healthy nonsmokers and smokers.

Morris A, Beck JM, Schloss PD, Campbell TB, Crothers K, Curtis JL, Flores SC, Fontenot AP, Ghedin E, Huang L, Jablonski K, Kleerup E, Lynch SV, Sodergren E, Twigg H, Young VB, Bassis CM, Venkataraman A, Schmidt TM, Weinstock GM; Lung HIV Microbiome Project.

Am J Respir Crit Care Med. 2013 May 15;187(10):1067-75. doi: 10.1164/rccm.201210-1913OC.


Bioinformatics for the Human Microbiome Project.

Gevers D, Pop M, Schloss PD, Huttenhower C.

PLoS Comput Biol. 2012;8(11):e1002779. doi: 10.1371/journal.pcbi.1002779. Epub 2012 Nov 29. No abstract available.


Secondary structure improves OTU assignments of 16S rRNA gene sequences.

Schloss PD.

ISME J. 2013 Mar;7(3):457-60. doi: 10.1038/ismej.2012.102. Epub 2012 Sep 27. No abstract available.


Metabolic reconstruction for metagenomic data and its application to the human microbiome.

Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C.

PLoS Comput Biol. 2012;8(6):e1002358. doi: 10.1371/journal.pcbi.1002358. Epub 2012 Jun 13.

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