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Whole-Genome Sequence and Classification of 11 Endophytic Bacteria from Poison Ivy (Toxicodendron radicans).

Tran PN, Tan NE, Lee YP, Gan HM, Polter SJ, Dailey LK, Hudson AO, Savka MA.

Genome Announc. 2015 Nov 19;3(6). pii: e01319-15. doi: 10.1128/genomeA.01319-15.


Isolation, Identification, Whole-Genome Sequencing, and Annotation of Four Bacillus Species, B. anthracis RIT375, B. circulans RIT379, B. altitudinis RIT380, and B. megaterium RIT381, from Internal Stem Tissue of the Insulin Plant Costus igneus.

Polter SJ, Caraballo AA, Lee YP, Eng WW, Gan HM, Wheatley MS, Savka MA, Thomas BN, Hudson AO.

Genome Announc. 2015 Jul 30;3(4). pii: e00847-15. doi: 10.1128/genomeA.00847-15.


Whole-Genome Sequence and Annotation of Octopine-Utilizing Pseudomonas kilonensis (Previously P. fluorescens) Strain 1855-344.

Eng WW, Gan HM, Gan HY, Hudson AO, Savka MA.

Genome Announc. 2015 May 14;3(3). pii: e00463-15. doi: 10.1128/genomeA.00463-15.


Chemical composition and disruption of quorum sensing signaling in geographically diverse United States propolis.

Savka MA, Dailey L, Popova M, Mihaylova R, Merritt B, Masek M, Le P, Nor SR, Ahmad M, Hudson AO, Bankova V.

Evid Based Complement Alternat Med. 2015;2015:472593. doi: 10.1155/2015/472593. Epub 2015 Apr 15.


Whole-Genome Sequencing and Annotation of Bacillus safensis RIT372 and Pseudomonas oryzihabitans RIT370 from Capsicum annuum (Bird's Eye Chili) and Capsicum chinense (Yellow Lantern Chili), Respectively.

Gan HY, Gan HM, Savka MA, Triassi AJ, Wheatley MS, Naqvi KF, Foxhall TE, Anauo MJ, Baldwin ML, Burkhardt RN, O'Bryon IG, Dailey LK, Busairi NI, Keith RC, Khair MH, Rasul MZ, Rosdi NA, Mountzouros JR, Rhoads AC, Selochan MA, Tautanov TB, Polter SJ, Marks KD, Caraballo AA, Hudson AO.

Genome Announc. 2015 Apr 16;3(2). pii: e00288-15. doi: 10.1128/genomeA.00288-15.


Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family.

Gan HM, Gan HY, Ahmad NH, Aziz NA, Hudson AO, Savka MA.

Front Cell Infect Microbiol. 2015 Jan 8;4:188. doi: 10.3389/fcimb.2014.00188. eCollection 2014.


Whole-Genome Sequences of Five Oligotrophic Bacteria Isolated from Deep within Lechuguilla Cave, New Mexico.

Gan HY, Gan HM, Tarasco AM, Busairi NI, Barton HA, Hudson AO, Savka MA.

Genome Announc. 2014 Nov 6;2(6). pii: e01133-14. doi: 10.1128/genomeA.01133-14.


L,L-diaminopimelate aminotransferase (DapL): a putative target for the development of narrow-spectrum antibacterial compounds.

Triassi AJ, Wheatley MS, Savka MA, Gan HM, Dobson RC, Hudson AO.

Front Microbiol. 2014 Sep 26;5:509. doi: 10.3389/fmicb.2014.00509. eCollection 2014.


Whole-genome sequences of 13 endophytic bacteria isolated from shrub willow (salix) grown in geneva, new york.

Gan HY, Gan HM, Savka MA, Triassi AJ, Wheatley MS, Smart LB, Fabio ES, Hudson AO.

Genome Announc. 2014 May 8;2(3). pii: e00288-14. doi: 10.1128/genomeA.00288-14.


High-Quality Draft Whole-Genome Sequences of Three Strains of Enterobacter Isolated from Jamaican Dioscorea cayenensis (Yellow Yam).

Gan HM, Triassi AJ, Wheatley MS, Savka MA, Hudson AO.

Genome Announc. 2014 Mar 13;2(2). pii: e00170-14. doi: 10.1128/genomeA.00170-14.


Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation.

Gan HM, Hudson AO, Rahman AY, Chan KG, Savka MA.

BMC Genomics. 2013 Jun 28;14:431. doi: 10.1186/1471-2164-14-431.


Biochemical characterization of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-2,6-diaminopimelate ligase (MurE) from Verrucomicrobium spinosum DSM 4136(T.).

McGroty SE, Pattaniyil DT, Patin D, Blanot D, Ravichandran AC, Suzuki H, Dobson RC, Savka MA, Hudson AO.

PLoS One. 2013 Jun 13;8(6):e66458. doi: 10.1371/journal.pone.0066458. Print 2013.


Whole-genome sequence of Enterobacter sp. strain SST3, an endophyte isolated from Jamaican sugarcane (Saccharum sp.) stalk tissue.

Gan HM, McGroty SE, Chew TH, Chan KG, Buckley LJ, Savka MA, Hudson AO.

J Bacteriol. 2012 Nov;194(21):5981-2. doi: 10.1128/JB.01469-12.


Genome sequence of Methylobacterium sp. strain GXF4, a xylem-associated bacterium isolated from Vitis vinifera L. grapevine.

Gan HM, Chew TH, Hudson AO, Savka MA.

J Bacteriol. 2012 Sep;194(18):5157-8. doi: 10.1128/JB.01201-12.


Genome sequence of Novosphingobium sp. strain Rr 2-17, a nopaline crown gall-associated bacterium isolated from Vitis vinifera L. grapevine.

Gan HM, Chew TH, Hudson AO, Savka MA.

J Bacteriol. 2012 Sep;194(18):5137-8. doi: 10.1128/JB.01159-12.


Inhibition of quorum sensing and efflux pump system by trifluoromethyl ketone proton pump inhibitors.

Varga ZG, Armada A, Cerca P, Amaral L, Mior Ahmad Subki MA, Savka MA, Szegedi E, Kawase M, Motohashi N, Molnár J.

In Vivo. 2012 Mar-Apr;26(2):277-85.


A novel property of propolis (bee glue): anti-pathogenic activity by inhibition of N-acyl-homoserine lactone mediated signaling in bacteria.

Bulman Z, Le P, Hudson AO, Savka MA.

J Ethnopharmacol. 2011 Dec 8;138(3):788-97. doi: 10.1016/j.jep.2011.10.029. Epub 2011 Oct 28.


LasR receptor for detection of long-chain quorum-sensing signals: identification of N-acyl-homoserine lactones encoded by the avsI locus of Agrobacterium vitis.

Savka MA, Le PT, Burr TJ.

Curr Microbiol. 2011 Jan;62(1):101-10. doi: 10.1007/s00284-010-9679-1. Epub 2010 Jun 1.


Quorum-sensing signal production by Agrobacterium vitis strains and their tumor-inducing and tartrate-catabolic plasmids.

Lowe N, Gan HM, Chakravartty V, Scott R, Szegedi E, Burr TJ, Savka MA.

FEMS Microbiol Lett. 2009 Jul;296(1):102-9. doi: 10.1111/j.1574-6968.2009.01627.x. Epub 2009 May 11.


Identification of an rsh gene from a Novosphingobium sp. necessary for quorum-sensing signal accumulation.

Gan HM, Buckley L, Szegedi E, Hudson AO, Savka MA.

J Bacteriol. 2009 Apr;191(8):2551-60. doi: 10.1128/JB.01692-08. Epub 2009 Feb 6.

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