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Results: 1 to 20 of 79

1.

Sequencing of first-strand cDNA library reveals full-length transcriptomes.

Agarwal S, Macfarlan TS, Sartor MA, Iwase S.

Nat Commun. 2015 Jan 21;6:6002. doi: 10.1038/ncomms7002.

PMID:
25607527
[PubMed - in process]
2.

Broad-Enrich: functional interpretation of large sets of broad genomic regions.

Cavalcante RG, Lee C, Welch RP, Patil S, Weymouth T, Scott LJ, Sartor MA.

Bioinformatics. 2014 Sep 1;30(17):i393-400. doi: 10.1093/bioinformatics/btu444.

PMID:
25161225
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Novel bioinformatics method for identification of genome-wide non-canonical spliced regions using RNA-Seq data.

Bai Y, Hassler J, Ziyar A, Li P, Wright Z, Menon R, Omenn GS, Cavalcoli JD, Kaufman RJ, Sartor MA.

PLoS One. 2014 Jul 3;9(7):e100864. doi: 10.1371/journal.pone.0100864. eCollection 2014.

PMID:
24991935
[PubMed - in process]
Free PMC Article
4.

PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data.

Zhang Y, Lin YH, Johnson TD, Rozek LS, Sartor MA.

Bioinformatics. 2014 Sep 15;30(18):2568-75. doi: 10.1093/bioinformatics/btu372. Epub 2014 Jun 3.

PMID:
24894502
[PubMed - indexed for MEDLINE]
5.

ChIP-Enrich: gene set enrichment testing for ChIP-seq data.

Welch RP, Lee C, Imbriano PM, Patil S, Weymouth TE, Smith RA, Scott LJ, Sartor MA.

Nucleic Acids Res. 2014 Jul;42(13):e105. doi: 10.1093/nar/gku463. Epub 2014 May 30.

PMID:
24878920
[PubMed - indexed for MEDLINE]
Free Article
6.

Regulation of the human endogenous retrovirus K (HML-2) transcriptome by the HIV-1 Tat protein.

Gonzalez-Hernandez MJ, Cavalcoli JD, Sartor MA, Contreras-Galindo R, Meng F, Dai M, Dube D, Saha AK, Gitlin SD, Omenn GS, Kaplan MH, Markovitz DM.

J Virol. 2014 Aug;88(16):8924-35. doi: 10.1128/JVI.00556-14. Epub 2014 May 28.

PMID:
24872592
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

MethylSig: a whole genome DNA methylation analysis pipeline.

Park Y, Figueroa ME, Rozek LS, Sartor MA.

Bioinformatics. 2014 Sep 1;30(17):2414-22. doi: 10.1093/bioinformatics/btu339. Epub 2014 May 16.

PMID:
24836530
[PubMed - indexed for MEDLINE]
8.

Developmental transcriptome analysis of human erythropoiesis.

Shi L, Lin YH, Sierant MC, Zhu F, Cui S, Guan Y, Sartor MA, Tanabe O, Lim KC, Engel JD.

Hum Mol Genet. 2014 Sep 1;23(17):4528-42. doi: 10.1093/hmg/ddu167. Epub 2014 Apr 29.

PMID:
24781209
[PubMed - in process]
9.

Epigenetics: relevance and implications for public health.

Rozek LS, Dolinoy DC, Sartor MA, Omenn GS.

Annu Rev Public Health. 2014;35:105-22. doi: 10.1146/annurev-publhealth-032013-182513. Review.

PMID:
24641556
[PubMed - indexed for MEDLINE]
10.

Perinatal bisphenol A exposure promotes dose-dependent alterations of the mouse methylome.

Kim JH, Sartor MA, Rozek LS, Faulk C, Anderson OS, Jones TR, Nahar MS, Dolinoy DC.

BMC Genomics. 2014 Jan 17;15:30. doi: 10.1186/1471-2164-15-30.

PMID:
24433282
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Bisphenol A-associated alterations in the expression and epigenetic regulation of genes encoding xenobiotic metabolizing enzymes in human fetal liver.

Nahar MS, Kim JH, Sartor MA, Dolinoy DC.

Environ Mol Mutagen. 2014 Apr;55(3):184-95. doi: 10.1002/em.21823. Epub 2013 Nov 9.

PMID:
24214726
[PubMed - indexed for MEDLINE]
12.

The circadian clock in oral health and diseases.

Papagerakis S, Zheng L, Schnell S, Sartor MA, Somers E, Marder W, McAlpin B, Kim D, McHugh J, Papagerakis P.

J Dent Res. 2014 Jan;93(1):27-35. doi: 10.1177/0022034513505768. Epub 2013 Sep 24. Review.

PMID:
24065634
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Folliculin contributes to VHL tumor suppressing activity in renal cancer through regulation of autophagy.

Bastola P, Stratton Y, Kellner E, Mikhaylova O, Yi Y, Sartor MA, Medvedovic M, Biesiada J, Meller J, Czyzyk-Krzeska MF.

PLoS One. 2013 Jul 29;8(7):e70030. doi: 10.1371/journal.pone.0070030. Print 2013.

PMID:
23922894
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

ER-stress-induced transcriptional regulation increases protein synthesis leading to cell death.

Han J, Back SH, Hur J, Lin YH, Gildersleeve R, Shan J, Yuan CL, Krokowski D, Wang S, Hatzoglou M, Kilberg MS, Sartor MA, Kaufman RJ.

Nat Cell Biol. 2013 May;15(5):481-90. doi: 10.1038/ncb2738. Epub 2013 Apr 28.

PMID:
23624402
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Bisphenol A-associated epigenomic changes in prepubescent girls: a cross-sectional study in Gharbiah, Egypt.

Kim JH, Rozek LS, Soliman AS, Sartor MA, Hablas A, Seifeldin IA, Colacino JA, Weinhouse C, Nahar MS, Dolinoy DC.

Environ Health. 2013 Apr 16;12:33. doi: 10.1186/1476-069X-12-33.

PMID:
23590724
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

SEC24A deficiency lowers plasma cholesterol through reduced PCSK9 secretion.

Chen XW, Wang H, Bajaj K, Zhang P, Meng ZX, Ma D, Bai Y, Liu HH, Adams E, Baines A, Yu G, Sartor MA, Zhang B, Yi Z, Lin J, Young SG, Schekman R, Ginsburg D.

Elife. 2013 Apr 9;2:e00444. doi: 10.7554/eLife.00444.

PMID:
23580231
[PubMed - in process]
Free PMC Article
17.

Hypoxia and hypoxia mimetics decrease aquaporin 5 (AQP5) expression through both hypoxia inducible factor-1α and proteasome-mediated pathways.

Kawedia JD, Yang F, Sartor MA, Gozal D, Czyzyk-Krzeska M, Menon AG.

PLoS One. 2013;8(3):e57541. doi: 10.1371/journal.pone.0057541. Epub 2013 Mar 1.

PMID:
23469202
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Microarray analysis reveals novel features of the muscle aging process in men and women.

Liu D, Sartor MA, Nader GA, Pistilli EE, Tanton L, Lilly C, Gutmann L, IglayReger HB, Visich PS, Hoffman EP, Gordon PM.

J Gerontol A Biol Sci Med Sci. 2013 Sep;68(9):1035-44. doi: 10.1093/gerona/glt015. Epub 2013 Feb 15.

PMID:
23418191
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comprehensive analysis of DNA methylation in head and neck squamous cell carcinoma indicates differences by survival and clinicopathologic characteristics.

Colacino JA, Dolinoy DC, Duffy SA, Sartor MA, Chepeha DB, Bradford CR, McHugh JB, Patel DA, Virani S, Walline HM, Bellile E, Terrell JE, Stoerker JA, Taylor JM, Carey TE, Wolf GT, Rozek LS.

PLoS One. 2013;8(1):e54742. doi: 10.1371/journal.pone.0054742. Epub 2013 Jan 24.

PMID:
23358896
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A genome-wide siRNA screen reveals positive and negative regulators of the NOD2 and NF-κB signaling pathways.

Warner N, Burberry A, Franchi L, Kim YG, McDonald C, Sartor MA, Núñez G.

Sci Signal. 2013 Jan 15;6(258):rs3. doi: 10.1126/scisignal.2003305.

PMID:
23322906
[PubMed - indexed for MEDLINE]
Free PMC Article
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