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Items: 1 to 20 of 92

1.

Adipogenic differentiation of thyroid cancer cells through the Pax8-PPARgamma fusion protein is regulated by thyroid transcription factor 1 (TTF-1).

Xu B, O'Donnell M, O'Donnell J, Yu J, Zhang Y, Sartor MA, Koenig RJ.

J Biol Chem. 2016 Jul 19. pii: jbc.M116.740324. [Epub ahead of print]

2.

Bisphenol A-associated alterations in genome-wide DNA methylation and gene expression patterns reveal sequence-dependent and non-monotonic effects in human fetal liver.

Faulk C, Kim JH, Jones TR, McEachin RC, Nahar MS, Dolinoy DC, Sartor MA.

Environ Epigenet. 2015 Dec;1(1). pii: dvv006. Epub 2015 Jan 1.

3.

Epigenome-wide DNA methylation analysis implicates neuronal and inflammatory signaling pathways in adult murine hepatic tumorigenesis following perinatal exposure to bisphenol A.

Weinhouse C, Sartor MA, Faulk C, Anderson OS, Sant KE, Harris C, Dolinoy DC.

Environ Mol Mutagen. 2016 Jul;57(6):435-46. doi: 10.1002/em.22024. Epub 2016 Jun 23.

PMID:
27334623
4.

Transcriptomic profiling of curcumin-treated human breast stem cells identifies a role for stearoyl-coa desaturase in breast cancer prevention.

Colacino JA, McDermott SP, Sartor MA, Wicha MS, Rozek LS.

Breast Cancer Res Treat. 2016 Jul;158(1):29-41. doi: 10.1007/s10549-016-3854-4. Epub 2016 Jun 15.

PMID:
27306423
5.

Detection of differential DNA methylation in repetitive DNA of mice and humans perinatally exposed to bisphenol A.

Faulk C, Kim JH, Anderson OS, Nahar MS, Jones TR, Sartor MA, Dolinoy DC.

Epigenetics. 2016 Jul 2;11(7):489-500. doi: 10.1080/15592294.2016.1183856. Epub 2016 Jun 6.

6.

Mono-2-ethylhexyl phthalate disrupts neurulation and modifies the embryonic redox environment and gene expression.

Sant KE, Dolinoy DC, Jilek JL, Sartor MA, Harris C.

Reprod Toxicol. 2016 Aug;63:32-48. doi: 10.1016/j.reprotox.2016.03.042. Epub 2016 May 7.

PMID:
27167697
7.

Subtypes of HPV-Positive Head and Neck Cancers Are Associated with HPV Characteristics, Copy Number Alterations, PIK3CA Mutation, and Pathway Signatures.

Zhang Y, Koneva LA, Virani S, Arthur AE, Virani A, Hall PB, Warden CD, Carey TE, Chepeha DB, Prince ME, McHugh JB, Wolf GT, Rozek LS, Sartor MA.

Clin Cancer Res. 2016 Apr 18. [Epub ahead of print]

PMID:
27091409
8.

A Mouse Model of X-linked Intellectual Disability Associated with Impaired Removal of Histone Methylation.

Iwase S, Brookes E, Agarwal S, Badeaux AI, Ito H, Vallianatos CN, Tomassy GS, Kasza T, Lin G, Thompson A, Gu L, Kwan KY, Chen C, Sartor MA, Egan B, Xu J, Shi Y.

Cell Rep. 2016 Feb 9;14(5):1000-9. doi: 10.1016/j.celrep.2015.12.091. Epub 2016 Jan 21.

9.

ConceptMetab: exploring relationships among metabolite sets to identify links among biomedical concepts.

Cavalcante RG, Patil S, Weymouth TE, Bendinskas KG, Karnovsky A, Sartor MA.

Bioinformatics. 2016 May 15;32(10):1536-43. doi: 10.1093/bioinformatics/btw016. Epub 2016 Jan 21.

PMID:
26794319
10.

RNA-Enrich: a cut-off free functional enrichment testing method for RNA-seq with improved detection power.

Lee C, Patil S, Sartor MA.

Bioinformatics. 2016 Apr 1;32(7):1100-2. doi: 10.1093/bioinformatics/btv694. Epub 2015 Nov 25.

PMID:
26607492
11.

Genomic binding and regulation of gene expression by the thyroid carcinoma-associated PAX8-PPARG fusion protein.

Zhang Y, Yu J, Lee C, Xu B, Sartor MA, Koenig RJ.

Oncotarget. 2015 Dec 1;6(38):40418-32. doi: 10.18632/oncotarget.6340.

12.

Stability of methylation markers in head and neck squamous cell carcinoma.

Virani S, Light E, Peterson LA, Sartor MA, Taylor JM, McHugh JB, Wolf GT, Rozek LS; Investigators of the University of Michigan Head and Neck Specialized Programs of Research Excellence (SPORE) Program.

Head Neck. 2016 Apr;38 Suppl 1:E1325-31. doi: 10.1002/hed.24223. Epub 2015 Nov 13.

PMID:
26566081
13.

NDN and CD1A are novel prognostic methylation markers in patients with head and neck squamous carcinomas.

Virani S, Bellile E, Bradford CR, Carey TE, Chepeha DB, Colacino JA, Helman JI, McHugh JB, Peterson LA, Sartor MA, Taylor JM, Walline HM, Wolf GT, Rozek LS.

BMC Cancer. 2015 Oct 30;15:825. doi: 10.1186/s12885-015-1806-8.

14.

Sequencing of first-strand cDNA library reveals full-length transcriptomes.

Agarwal S, Macfarlan TS, Sartor MA, Iwase S.

Nat Commun. 2015 Jan 21;6:6002. doi: 10.1038/ncomms7002.

PMID:
25607527
15.

Broad-Enrich: functional interpretation of large sets of broad genomic regions.

Cavalcante RG, Lee C, Welch RP, Patil S, Weymouth T, Scott LJ, Sartor MA.

Bioinformatics. 2014 Sep 1;30(17):i393-400. doi: 10.1093/bioinformatics/btu444.

16.

Novel bioinformatics method for identification of genome-wide non-canonical spliced regions using RNA-Seq data.

Bai Y, Hassler J, Ziyar A, Li P, Wright Z, Menon R, Omenn GS, Cavalcoli JD, Kaufman RJ, Sartor MA.

PLoS One. 2014 Jul 3;9(7):e100864. doi: 10.1371/journal.pone.0100864. eCollection 2014.

17.

PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data.

Zhang Y, Lin YH, Johnson TD, Rozek LS, Sartor MA.

Bioinformatics. 2014 Sep 15;30(18):2568-75. doi: 10.1093/bioinformatics/btu372. Epub 2014 Jun 3.

18.

ChIP-Enrich: gene set enrichment testing for ChIP-seq data.

Welch RP, Lee C, Imbriano PM, Patil S, Weymouth TE, Smith RA, Scott LJ, Sartor MA.

Nucleic Acids Res. 2014 Jul;42(13):e105. doi: 10.1093/nar/gku463. Epub 2014 May 30.

19.

Regulation of the human endogenous retrovirus K (HML-2) transcriptome by the HIV-1 Tat protein.

Gonzalez-Hernandez MJ, Cavalcoli JD, Sartor MA, Contreras-Galindo R, Meng F, Dai M, Dube D, Saha AK, Gitlin SD, Omenn GS, Kaplan MH, Markovitz DM.

J Virol. 2014 Aug;88(16):8924-35. doi: 10.1128/JVI.00556-14. Epub 2014 May 28.

20.

MethylSig: a whole genome DNA methylation analysis pipeline.

Park Y, Figueroa ME, Rozek LS, Sartor MA.

Bioinformatics. 2014 Sep 1;30(17):2414-22. doi: 10.1093/bioinformatics/btu339. Epub 2014 May 16.

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