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Results: 1 to 20 of 31

1.

Exon identity crisis: disease-causing mutations that disrupt the splicing code.

Sterne-Weiler T, Sanford JR.

Genome Biol. 2014 Jan 23;15(1):201. [Epub ahead of print]

PMID:
24456648
[PubMed - as supplied by publisher]
2.

MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing.

Mort M, Sterne-Weiler T, Li B, Ball EV, Cooper DN, Radivojac P, Sanford JR, Mooney SD.

Genome Biol. 2014 Jan 13;15(1):R19. [Epub ahead of print]

PMID:
24451234
[PubMed - as supplied by publisher]
Free PMC Article
3.

Splicing factor TRA2B is required for neural progenitor survival.

Roberts JM, Ennajdaoui H, Edmondson C, Wirth B, Sanford JR, Chen B.

J Comp Neurol. 2014 Feb 1;522(2):372-92. doi: 10.1002/cne.23405.

PMID:
23818142
[PubMed - in process]
4.

Frac-seq reveals isoform-specific recruitment to polyribosomes.

Sterne-Weiler T, Martinez-Nunez RT, Howard JM, Cvitovik I, Katzman S, Tariq MA, Pourmand N, Sanford JR.

Genome Res. 2013 Oct;23(10):1615-23. doi: 10.1101/gr.148585.112. Epub 2013 Jun 19.

PMID:
23783272
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Site identification in high-throughput RNA-protein interaction data.

Uren PJ, Bahrami-Samani E, Burns SC, Qiao M, Karginov FV, Hodges E, Hannon GJ, Sanford JR, Penalva LO, Smith AD.

Bioinformatics. 2012 Dec 1;28(23):3013-20. doi: 10.1093/bioinformatics/bts569. Epub 2012 Sep 28.

PMID:
23024010
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Predicting sequence and structural specificities of RNA binding regions recognized by splicing factor SRSF1.

Wang X, Juan L, Lv J, Wang K, Sanford JR, Liu Y.

BMC Genomics. 2011 Dec 23;12 Suppl 5:S8. doi: 10.1186/1471-2164-12-S5-S8. Epub 2011 Dec 23.

PMID:
22369183
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Prioritizing single-nucleotide variations that potentially regulate alternative splicing.

Teng M, Wang Y, Wang G, Jung J, Edenberg HJ, Sanford JR, Liu Y.

BMC Proc. 2011 Nov 29;5 Suppl 9:S40. doi: 10.1186/1753-6561-5-S9-S40.

PMID:
22373210
[PubMed]
Free PMC Article
8.

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ Jr, Glenn TC, Green RE, Ray DA.

Genome Biol. 2012 Jan 31;13(1):415. doi: 10.1186/gb-2012-13-1-415.

PMID:
22293439
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Loss of exon identity is a common mechanism of human inherited disease.

Sterne-Weiler T, Howard J, Mort M, Cooper DN, Sanford JR.

Genome Res. 2011 Oct;21(10):1563-71. doi: 10.1101/gr.118638.110. Epub 2011 Jul 12.

PMID:
21750108
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing.

Wang X, Wang K, Radovich M, Wang Y, Wang G, Feng W, Sanford JR, Liu Y.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S4. doi: 10.1186/1471-2164-10-S1-S4.

PMID:
19594881
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

DNA Methyltransferase protein synthesis is reduced in CXXC finger protein 1-deficient embryonic stem cells.

Butler JS, Palam LR, Tate CM, Sanford JR, Wek RC, Skalnik DG.

DNA Cell Biol. 2009 May;28(5):223-31. doi: 10.1089/dna.2009.0854.

PMID:
19388845
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.

Sanford JR, Wang X, Mort M, Vanduyn N, Cooper DN, Mooney SD, Edenberg HJ, Liu Y.

Genome Res. 2009 Mar;19(3):381-94. doi: 10.1101/gr.082503.108. Epub 2008 Dec 30.

PMID:
19116412
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Identification of nuclear and cytoplasmic mRNA targets for the shuttling protein SF2/ASF.

Sanford JR, Coutinho P, Hackett JA, Wang X, Ranahan W, Caceres JF.

PLoS One. 2008 Oct 8;3(10):e3369. doi: 10.1371/journal.pone.0003369.

PMID:
18841201
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The splicing factor SF2/ASF regulates translation initiation by enhancing phosphorylation of 4E-BP1.

Michlewski G, Sanford JR, Cáceres JF.

Mol Cell. 2008 Apr 25;30(2):179-89. doi: 10.1016/j.molcel.2008.03.013.

PMID:
18439897
[PubMed - indexed for MEDLINE]
Free Article
15.

Using RNase sequence specificity to refine the identification of RNA-protein binding regions.

Wang X, Wang G, Shen C, Li L, Wang X, Mooney SD, Edenberg HJ, Sanford JR, Liu Y.

BMC Genomics. 2008;9 Suppl 1:S17. doi: 10.1186/1471-2164-9-S1-S17.

PMID:
18366606
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Translational control of C-terminal Src kinase (Csk) expression by PRL3 phosphatase.

Liang F, Luo Y, Dong Y, Walls CD, Liang J, Jiang HY, Sanford JR, Wek RC, Zhang ZY.

J Biol Chem. 2008 Apr 18;283(16):10339-46. doi: 10.1074/jbc.M708285200. Epub 2008 Feb 11.

PMID:
18268019
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Concerted regulation of nuclear and cytoplasmic activities of SR proteins by AKT.

Blaustein M, Pelisch F, Tanos T, Muñoz MJ, Wengier D, Quadrana L, Sanford JR, Muschietti JP, Kornblihtt AR, Cáceres JF, Coso OA, Srebrow A.

Nat Struct Mol Biol. 2005 Dec;12(12):1037-44. Epub 2005 Nov 20.

PMID:
16299516
[PubMed - indexed for MEDLINE]
18.

Reversible phosphorylation differentially affects nuclear and cytoplasmic functions of splicing factor 2/alternative splicing factor.

Sanford JR, Ellis JD, Cazalla D, Cáceres JF.

Proc Natl Acad Sci U S A. 2005 Oct 18;102(42):15042-7. Epub 2005 Oct 6.

PMID:
16210245
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Multiple roles of arginine/serine-rich splicing factors in RNA processing.

Sanford JR, Ellis J, Cáceres JF.

Biochem Soc Trans. 2005 Jun;33(Pt 3):443-6. Review.

PMID:
15916537
[PubMed - indexed for MEDLINE]
20.

A rapid and efficient protocol to purify biologically active recombinant proteins from mammalian cells.

Cazalla D, Sanford JR, Cáceres JF.

Protein Expr Purif. 2005 Jul;42(1):54-8.

PMID:
15878828
[PubMed - indexed for MEDLINE]

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