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Results: 1 to 20 of 22

1.

Human somatic cell mutagenesis creates genetically tractable sarcomas.

Molyneux SD, Waterhouse PD, Shelton D, Shao YW, Watling CM, Tang QL, Harris IS, Dickson BC, Tharmapalan P, Sandve GK, Zhang X, Bailey SD, Berman H, Wunder JS, Iszvak Z, Lupien M, Mak TW, Khokha R.

Nat Genet. 2014 Sep;46(9):964-72. doi: 10.1038/ng.3065. Epub 2014 Aug 17.

PMID:
25129143
[PubMed - in process]
2.

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines.

Rye M, Sandve GK, Daub CO, Kawaji H, Carninci P, Forrest AR, Drabløs F; FANTOM consortium.

BMC Genomics. 2014 Mar 26;15:120. doi: 10.1186/1471-2164-15-120.

PMID:
24669905
[PubMed - in process]
Free PMC Article
3.

HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization.

Paulsen J, Sandve GK, Gundersen S, Lien TG, Trengereid K, Hovig E.

Bioinformatics. 2014 Jun 1;30(11):1620-2. doi: 10.1093/bioinformatics/btu082. Epub 2014 Feb 7.

PMID:
24511080
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Ten simple rules for reproducible computational research.

Sandve GK, Nekrutenko A, Taylor J, Hovig E.

PLoS Comput Biol. 2013 Oct;9(10):e1003285. doi: 10.1371/journal.pcbi.1003285. Epub 2013 Oct 24. No abstract available.

PMID:
24204232
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression.

Handel AE, Sandve GK, Disanto G, Handunnetthi L, Giovannoni G, Ramagopalan SV.

BMC Med Genomics. 2013 Oct 30;6:45. doi: 10.1186/1755-8794-6-45.

PMID:
24171864
[PubMed - indexed for MEDLINE]
Free Article
6.

Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease.

Handel AE, Sandve GK, Disanto G, Berlanga-Taylor AJ, Gallone G, Hanwell H, Drabløs F, Giovannoni G, Ebers GC, Ramagopalan SV.

BMC Med. 2013 Jul 12;11:163. doi: 10.1186/1741-7015-11-163.

PMID:
23849224
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The Genomic HyperBrowser: an analysis web server for genome-scale data.

Sandve GK, Gundersen S, Johansen M, Glad IK, Gunathasan K, Holden L, Holden M, Liestøl K, Nygård S, Nygaard V, Paulsen J, Rydbeck H, Trengereid K, Clancy T, Drabløs F, Ferkingstad E, Kalas M, Lien T, Rye MB, Frigessi A, Hovig E.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W133-41. doi: 10.1093/nar/gkt342. Epub 2013 Apr 30.

PMID:
23632163
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements.

Paulsen J, Lien TG, Sandve GK, Holden L, Borgan O, Glad IK, Hovig E.

Nucleic Acids Res. 2013 May 1;41(10):5164-74. doi: 10.1093/nar/gkt227. Epub 2013 Apr 9.

PMID:
23571755
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Age-associated hyper-methylated regions in the human brain overlap with bivalent chromatin domains.

Watson CT, Disanto G, Sandve GK, Breden F, Giovannoni G, Ramagopalan SV.

PLoS One. 2012;7(9):e43840. doi: 10.1371/journal.pone.0043840. Epub 2012 Sep 24.

PMID:
23028473
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Vitamin D receptor binding, chromatin states and association with multiple sclerosis.

Disanto G, Sandve GK, Berlanga-Taylor AJ, Ragnedda G, Morahan JM, Watson CT, Giovannoni G, Ebers GC, Ramagopalan SV.

Hum Mol Genet. 2012 Aug 15;21(16):3575-86. doi: 10.1093/hmg/dds189. Epub 2012 May 16.

PMID:
22595971
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genomic regions associated with multiple sclerosis are active in B cells.

Disanto G, Sandve GK, Berlanga-Taylor AJ, Morahan JM, Dobson R, Giovannoni G, Ramagopalan SV.

PLoS One. 2012;7(3):e32281. doi: 10.1371/journal.pone.0032281. Epub 2012 Mar 2.

PMID:
22396755
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identifying elemental genomic track types and representing them uniformly.

Gundersen S, Kalaš M, Abul O, Frigessi A, Hovig E, Sandve GK.

BMC Bioinformatics. 2011 Dec 30;12:494. doi: 10.1186/1471-2105-12-494.

PMID:
22208806
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Sequential Monte Carlo multiple testing.

Sandve GK, Ferkingstad E, Nygård S.

Bioinformatics. 2011 Dec 1;27(23):3235-41. doi: 10.1093/bioinformatics/btr568. Epub 2011 Oct 13.

PMID:
21998154
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Increased expression of IRF4 and ETS1 in CD4+ cells from patients with intermittent allergic rhinitis.

Bruhn S, Barrenäs F, Mobini R, Andersson BA, Chavali S, Egan BS, Hovig E, Sandve GK, Langston MA, Rogers G, Wang H, Benson M.

Allergy. 2012 Jan;67(1):33-40. doi: 10.1111/j.1398-9995.2011.02707.x. Epub 2011 Sep 15.

PMID:
21919915
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The differential disease regulome.

Sandve GK, Gundersen S, Rydbeck H, Glad IK, Holden L, Holden M, Liestøl K, Clancy T, Drabløs F, Ferkingstad E, Johansen M, Nygaard V, Tøstesen E, Frigessi A, Hovig E.

BMC Genomics. 2011 Jul 7;12:353. doi: 10.1186/1471-2164-12-353.

PMID:
21736759
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The Genomic HyperBrowser: inferential genomics at the sequence level.

Sandve GK, Gundersen S, Rydbeck H, Glad IK, Holden L, Holden M, Liestøl K, Clancy T, Ferkingstad E, Johansen M, Nygaard V, Tøstesen E, Frigessi A, Hovig E.

Genome Biol. 2010;11(12):R121. doi: 10.1186/gb-2010-11-12-r121. Epub 2010 Dec 23.

PMID:
21182759
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Segmentation of DNA sequences into twostate regions and melting fork regions.

Tøstesen E, Sandve GK, Liu F, Hovig E.

J Phys Condens Matter. 2009 Jan 21;21(3):034109. doi: 10.1088/0953-8984/21/3/034109. Epub 2008 Dec 17.

PMID:
21817254
[PubMed]
18.

Compo: composite motif discovery using discrete models.

Sandve GK, Abul O, Drabløs F.

BMC Bioinformatics. 2008 Dec 8;9:527. doi: 10.1186/1471-2105-9-527.

PMID:
19063744
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Assessment of composite motif discovery methods.

Klepper K, Sandve GK, Abul O, Johansen J, Drablos F.

BMC Bioinformatics. 2008 Feb 26;9:123. doi: 10.1186/1471-2105-9-123.

PMID:
18302777
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Improved benchmarks for computational motif discovery.

Sandve GK, Abul O, Walseng V, Drabløs F.

BMC Bioinformatics. 2007 Jun 8;8:193.

PMID:
17559676
[PubMed - indexed for MEDLINE]
Free PMC Article

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