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Results: 1 to 20 of 25

1.

ClusTrack: Feature Extraction and Similarity Measures for Clustering of Genome-Wide Data Sets.

Rydbeck H, Sandve GK, Ferkingstad E, Simovski B, Rye M, Hovig E.

PLoS One. 2015 Apr 16;10(4):e0123261. doi: 10.1371/journal.pone.0123261. eCollection 2015.

2.

EBNA2 binds to genomic intervals associated with multiple sclerosis and overlaps with vitamin D receptor occupancy.

Ricigliano VA, Handel AE, Sandve GK, Annibali V, Ristori G, Mechelli R, Cader MZ, Salvetti M.

PLoS One. 2015 Apr 8;10(4):e0119605. doi: 10.1371/journal.pone.0119605. eCollection 2015.

3.

Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis.

Christiansen IK, Sandve GK, Schmitz M, Dürst M, Hovig E.

PLoS One. 2015 Mar 20;10(3):e0119566. doi: 10.1371/journal.pone.0119566. eCollection 2015.

4.

Human somatic cell mutagenesis creates genetically tractable sarcomas.

Molyneux SD, Waterhouse PD, Shelton D, Shao YW, Watling CM, Tang QL, Harris IS, Dickson BC, Tharmapalan P, Sandve GK, Zhang X, Bailey SD, Berman H, Wunder JS, Izsvák Z, Lupien M, Mak TW, Khokha R.

Nat Genet. 2014 Sep;46(9):964-72. doi: 10.1038/ng.3065. Epub 2014 Aug 17. Erratum in: Nat Genet. 2014 Dec;46(12):1372. Iszvak, Zsuzsanna [corrected to Izsvák, Zsuzsanna.

PMID:
25129143
5.

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines.

Rye M, Sandve GK, Daub CO, Kawaji H, Carninci P, Forrest AR, Drabløs F; FANTOM consortium.

BMC Genomics. 2014 Mar 26;15:120. doi: 10.1186/1471-2164-15-120.

6.

HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization.

Paulsen J, Sandve GK, Gundersen S, Lien TG, Trengereid K, Hovig E.

Bioinformatics. 2014 Jun 1;30(11):1620-2. doi: 10.1093/bioinformatics/btu082. Epub 2014 Feb 7.

7.

Ten simple rules for reproducible computational research.

Sandve GK, Nekrutenko A, Taylor J, Hovig E.

PLoS Comput Biol. 2013 Oct;9(10):e1003285. doi: 10.1371/journal.pcbi.1003285. Epub 2013 Oct 24. No abstract available.

8.

Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression.

Handel AE, Sandve GK, Disanto G, Handunnetthi L, Giovannoni G, Ramagopalan SV.

BMC Med Genomics. 2013 Oct 30;6:45. doi: 10.1186/1755-8794-6-45.

9.

Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease.

Handel AE, Sandve GK, Disanto G, Berlanga-Taylor AJ, Gallone G, Hanwell H, Drabløs F, Giovannoni G, Ebers GC, Ramagopalan SV.

BMC Med. 2013 Jul 12;11:163. doi: 10.1186/1741-7015-11-163.

10.

The Genomic HyperBrowser: an analysis web server for genome-scale data.

Sandve GK, Gundersen S, Johansen M, Glad IK, Gunathasan K, Holden L, Holden M, Liestøl K, Nygård S, Nygaard V, Paulsen J, Rydbeck H, Trengereid K, Clancy T, Drabløs F, Ferkingstad E, Kalas M, Lien T, Rye MB, Frigessi A, Hovig E.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W133-41. doi: 10.1093/nar/gkt342. Epub 2013 Apr 30.

11.

Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements.

Paulsen J, Lien TG, Sandve GK, Holden L, Borgan O, Glad IK, Hovig E.

Nucleic Acids Res. 2013 May 1;41(10):5164-74. doi: 10.1093/nar/gkt227. Epub 2013 Apr 9.

12.

Age-associated hyper-methylated regions in the human brain overlap with bivalent chromatin domains.

Watson CT, Disanto G, Sandve GK, Breden F, Giovannoni G, Ramagopalan SV.

PLoS One. 2012;7(9):e43840. doi: 10.1371/journal.pone.0043840. Epub 2012 Sep 24.

13.

Vitamin D receptor binding, chromatin states and association with multiple sclerosis.

Disanto G, Sandve GK, Berlanga-Taylor AJ, Ragnedda G, Morahan JM, Watson CT, Giovannoni G, Ebers GC, Ramagopalan SV.

Hum Mol Genet. 2012 Aug 15;21(16):3575-86. doi: 10.1093/hmg/dds189. Epub 2012 May 16.

14.

Genomic regions associated with multiple sclerosis are active in B cells.

Disanto G, Sandve GK, Berlanga-Taylor AJ, Morahan JM, Dobson R, Giovannoni G, Ramagopalan SV.

PLoS One. 2012;7(3):e32281. doi: 10.1371/journal.pone.0032281. Epub 2012 Mar 2.

15.

Identifying elemental genomic track types and representing them uniformly.

Gundersen S, Kalaš M, Abul O, Frigessi A, Hovig E, Sandve GK.

BMC Bioinformatics. 2011 Dec 30;12:494. doi: 10.1186/1471-2105-12-494.

16.

Sequential Monte Carlo multiple testing.

Sandve GK, Ferkingstad E, Nygård S.

Bioinformatics. 2011 Dec 1;27(23):3235-41. doi: 10.1093/bioinformatics/btr568. Epub 2011 Oct 13.

17.

Increased expression of IRF4 and ETS1 in CD4+ cells from patients with intermittent allergic rhinitis.

Bruhn S, Barrenäs F, Mobini R, Andersson BA, Chavali S, Egan BS, Hovig E, Sandve GK, Langston MA, Rogers G, Wang H, Benson M.

Allergy. 2012 Jan;67(1):33-40. doi: 10.1111/j.1398-9995.2011.02707.x. Epub 2011 Sep 15.

18.

The differential disease regulome.

Sandve GK, Gundersen S, Rydbeck H, Glad IK, Holden L, Holden M, Liestøl K, Clancy T, Drabløs F, Ferkingstad E, Johansen M, Nygaard V, Tøstesen E, Frigessi A, Hovig E.

BMC Genomics. 2011 Jul 7;12:353. doi: 10.1186/1471-2164-12-353.

19.

The Genomic HyperBrowser: inferential genomics at the sequence level.

Sandve GK, Gundersen S, Rydbeck H, Glad IK, Holden L, Holden M, Liestøl K, Clancy T, Ferkingstad E, Johansen M, Nygaard V, Tøstesen E, Frigessi A, Hovig E.

Genome Biol. 2010;11(12):R121. doi: 10.1186/gb-2010-11-12-r121. Epub 2010 Dec 23.

20.

Segmentation of DNA sequences into twostate regions and melting fork regions.

Tøstesen E, Sandve GK, Liu F, Hovig E.

J Phys Condens Matter. 2009 Jan 21;21(3):034109. doi: 10.1088/0953-8984/21/3/034109. Epub 2008 Dec 17.

PMID:
21817254
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