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Items: 1 to 20 of 34

1.

Durable coexistence of donor and recipient strains after fecal microbiota transplantation.

Li SS, Zhu A, Benes V, Costea PI, Hercog R, Hildebrand F, Huerta-Cepas J, Nieuwdorp M, Salojärvi J, Voigt AY, Zeller G, Sunagawa S, de Vos WM, Bork P.

Science. 2016 Apr 29;352(6285):586-9. doi: 10.1126/science.aad8852.

PMID:
27126044
2.

Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults.

Kolmeder CA, Salojärvi J, Ritari J, de Been M, Raes J, Falony G, Vieira-Silva S, Kekkonen RA, Corthals GL, Palva A, Salonen A, de Vos WM.

PLoS One. 2016 Apr 12;11(4):e0153294. doi: 10.1371/journal.pone.0153294. eCollection 2016.

3.

Photosystem II Repair and Plant Immunity: Lessons Learned from Arabidopsis Mutant Lacking the THYLAKOID LUMEN PROTEIN 18.3.

Järvi S, Isojärvi J, Kangasjärvi S, Salojärvi J, Mamedov F, Suorsa M, Aro EM.

Front Plant Sci. 2016 Mar 31;7:405. doi: 10.3389/fpls.2016.00405. eCollection 2016.

4.

Cost-Effective Marine Protection - A Pragmatic Approach.

Oinonen S, Hyytiäinen K, Ahlvik L, Laamanen M, Lehtoranta V, Salojärvi J, Virtanen J.

PLoS One. 2016 Jan 11;11(1):e0147085. doi: 10.1371/journal.pone.0147085. eCollection 2016.

5.

Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database.

Ritari J, Salojärvi J, Lahti L, de Vos WM.

BMC Genomics. 2015 Dec 12;16:1056. doi: 10.1186/s12864-015-2265-y.

6.

Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children.

Cheng J, Ringel-Kulka T, Heikamp-de Jong I, Ringel Y, Carroll I, de Vos WM, Salojärvi J, Satokari R.

ISME J. 2016 Apr;10(4):1002-14. doi: 10.1038/ismej.2015.177. Epub 2015 Oct 2.

PMID:
26430856
7.

Large-Scale Phenomics Identifies Primary and Fine-Tuning Roles for CRKs in Responses Related to Oxidative Stress.

Bourdais G, Burdiak P, Gauthier A, Nitsch L, Salojärvi J, Rayapuram C, Idänheimo N, Hunter K, Kimura S, Merilo E, Vaattovaara A, Oracz K, Kaufholdt D, Pallon A, Anggoro DT, Glów D, Lowe J, Zhou J, Mohammadi O, Puukko T, Albert A, Lang H, Ernst D, Kollist H, Brosché M, Durner J, Borst JW, Collinge DB, Karpiński S, Lyngkjær MF, Robatzek S, Wrzaczek M, Kangasjärvi J; CRK Consortium.

PLoS Genet. 2015 Jul 21;11(7):e1005373. doi: 10.1371/journal.pgen.1005373. eCollection 2015 Jul.

8.

Integration of photosynthesis, development and stress as an opportunity for plant biology.

Allahverdiyeva Y, Battchikova N, Brosché M, Fujii H, Kangasjärvi S, Mulo P, Mähönen AP, Nieminen K, Overmyer K, Salojärvi J, Wrzaczek M.

New Phytol. 2015 Nov;208(3):647-55. doi: 10.1111/nph.13549. Epub 2015 Jul 14.

PMID:
26174112
9.

Subunits B'γ and B'ζ of protein phosphatase 2A regulate photo-oxidative stress responses and growth in Arabidopsis thaliana.

Konert G, Rahikainen M, Trotta A, Durian G, Salojärvi J, Khorobrykh S, Tyystjärvi E, Kangasjärvi S.

Plant Cell Environ. 2015 Dec;38(12):2641-51. doi: 10.1111/pce.12575. Epub 2015 Jul 14.

PMID:
26012558
10.

Navigating through metaproteomics data: a logbook of database searching.

Muth T, Kolmeder CA, Salojärvi J, Keskitalo S, Varjosalo M, Verdam FJ, Rensen SS, Reichl U, de Vos WM, Rapp E, Martens L.

Proteomics. 2015 Oct;15(20):3439-53. doi: 10.1002/pmic.201400560. Epub 2015 Apr 27.

PMID:
25778831
11.

Effects of bowel cleansing on the intestinal microbiota.

Jalanka J, Salonen A, Salojärvi J, Ritari J, Immonen O, Marciani L, Gowland P, Hoad C, Garsed K, Lam C, Palva A, Spiller RC, de Vos WM.

Gut. 2015 Oct;64(10):1562-8. doi: 10.1136/gutjnl-2014-307240. Epub 2014 Dec 19.

PMID:
25527456
12.

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera.

Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, de Jong MA, Duplouy A, Smolander OP, Vogel H, McCoy RC, Qian K, Chong WS, Zhang Q, Ahmad F, Haukka JK, Joshi A, Salojärvi J, Wheat CW, Grosse-Wilde E, Hughes D, Katainen R, Pitkänen E, Ylinen J, Waterhouse RM, Turunen M, Vähärautio A, Ojanen SP, Schulman AH, Taipale M, Lawson D, Ukkonen E, Mäkinen V, Goldsmith MR, Holm L, Auvinen P, Frilander MJ, Hanski I.

Nat Commun. 2014 Sep 5;5:4737. doi: 10.1038/ncomms5737.

13.

PLETHORA gradient formation mechanism separates auxin responses.

Mähönen AP, ten Tusscher K, Siligato R, Smetana O, Díaz-Triviño S, Salojärvi J, Wachsman G, Prasad K, Heidstra R, Scheres B.

Nature. 2014 Nov 6;515(7525):125-9. doi: 10.1038/nature13663. Epub 2014 Aug 24.

14.

Tipping elements in the human intestinal ecosystem.

Lahti L, Salojärvi J, Salonen A, Scheffer M, de Vos WM.

Nat Commun. 2014 Jul 8;5:4344. doi: 10.1038/ncomms5344.

15.

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men.

Salonen A, Lahti L, Salojärvi J, Holtrop G, Korpela K, Duncan SH, Date P, Farquharson F, Johnstone AM, Lobley GE, Louis P, Flint HJ, de Vos WM.

ISME J. 2014 Nov;8(11):2218-30. doi: 10.1038/ismej.2014.63. Epub 2014 Apr 24.

PMID:
24763370
16.

Transcriptomics and functional genomics of ROS-induced cell death regulation by RADICAL-INDUCED CELL DEATH1.

Brosché M, Blomster T, Salojärvi J, Cui F, Sipari N, Leppälä J, Lamminmäki A, Tomai G, Narayanasamy S, Reddy RA, Keinänen M, Overmyer K, Kangasjärvi J.

PLoS Genet. 2014 Feb 13;10(2):e1004112. doi: 10.1371/journal.pgen.1004112. eCollection 2014 Feb.

17.

The Arabidopsis thaliana cysteine-rich receptor-like kinases CRK6 and CRK7 protect against apoplastic oxidative stress.

Idänheimo N, Gauthier A, Salojärvi J, Siligato R, Brosché M, Kollist H, Mähönen AP, Kangasjärvi J, Wrzaczek M.

Biochem Biophys Res Commun. 2014 Mar 7;445(2):457-62. doi: 10.1016/j.bbrc.2014.02.013. Epub 2014 Feb 12.

PMID:
24530916
18.

Faecal microbiota composition and host-microbe cross-talk following gastroenteritis and in postinfectious irritable bowel syndrome.

Jalanka-Tuovinen J, Salojärvi J, Salonen A, Immonen O, Garsed K, Kelly FM, Zaitoun A, Palva A, Spiller RC, de Vos WM.

Gut. 2014 Nov;63(11):1737-45. doi: 10.1136/gutjnl-2013-305994. Epub 2013 Dec 5.

PMID:
24310267
19.

Duodenal microbiota composition and mucosal homeostasis in pediatric celiac disease.

Cheng J, Kalliomäki M, Heilig HG, Palva A, Lähteenoja H, de Vos WM, Salojärvi J, Satokari R.

BMC Gastroenterol. 2013 Jul 11;13:113. doi: 10.1186/1471-230X-13-113.

20.

Intestinal microbiota in healthy U.S. young children and adults--a high throughput microarray analysis.

Ringel-Kulka T, Cheng J, Ringel Y, Salojärvi J, Carroll I, Palva A, de Vos WM, Satokari R.

PLoS One. 2013 May 23;8(5):e64315. doi: 10.1371/journal.pone.0064315. Print 2013.

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