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Results: 1 to 20 of 28

1.

Large-Scale Phenomics Identifies Primary and Fine-Tuning Roles for CRKs in Responses Related to Oxidative Stress.

Bourdais G, Burdiak P, Gauthier A, Nitsch L, Salojärvi J, Rayapuram C, Idänheimo N, Hunter K, Kimura S, Merilo E, Vaattovaara A, Oracz K, Kaufholdt D, Pallon A, Anggoro DT, Glów D, Lowe J, Zhou J, Mohammadi O, Puukko T, Albert A, Lang H, Ernst D, Kollist H, Brosché M, Durner J, Borst JW, Collinge DB, Karpiński S, Lyngkjær MF, Robatzek S, Wrzaczek M, Kangasjärvi J; CRK Consortium.

PLoS Genet. 2015 Jul 21;11(7):e1005373. doi: 10.1371/journal.pgen.1005373. eCollection 2015 Jul.

2.

Integration of photosynthesis, development and stress as an opportunity for plant biology.

Allahverdiyeva Y, Battchikova N, Brosché M, Fujii H, Kangasjärvi S, Mulo P, Mähönen AP, Nieminen K, Overmyer K, Salojärvi J, Wrzaczek M.

New Phytol. 2015 Jul 14. doi: 10.1111/nph.13549. [Epub ahead of print]

PMID:
26174112
3.

Subunits B'γ and B'ζ of protein phosphatase 2A regulate photo-oxidative stress responses and growth in Arabidopsis thaliana.

Konert G, Rahikainen M, Trotta A, Durian G, Salojärvi J, Khorobrykh S, Tyystjärvi E, Kangasjärvi S.

Plant Cell Environ. 2015 May 27. doi: 10.1111/pce.12575. [Epub ahead of print]

PMID:
26012558
4.

Navigating through metaproteomics data: A logbook of database searching.

Muth T, Kolmeder CA, Salojärvi J, Keskitalo S, Varjosalo M, Verdam FJ, Rensen SS, Reichl U, de Vos WM, Rapp E, Martens L.

Proteomics. 2015 Mar 16. doi: 10.1002/pmic.201400560. [Epub ahead of print]

PMID:
25778831
5.

Effects of bowel cleansing on the intestinal microbiota.

Jalanka J, Salonen A, Salojärvi J, Ritari J, Immonen O, Marciani L, Gowland P, Hoad C, Garsed K, Lam C, Palva A, Spiller RC, de Vos WM.

Gut. 2014 Dec 19. pii: gutjnl-2014-307240. doi: 10.1136/gutjnl-2014-307240. [Epub ahead of print]

PMID:
25527456
6.

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera.

Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, de Jong MA, Duplouy A, Smolander OP, Vogel H, McCoy RC, Qian K, Chong WS, Zhang Q, Ahmad F, Haukka JK, Joshi A, Salojärvi J, Wheat CW, Grosse-Wilde E, Hughes D, Katainen R, Pitkänen E, Ylinen J, Waterhouse RM, Turunen M, Vähärautio A, Ojanen SP, Schulman AH, Taipale M, Lawson D, Ukkonen E, Mäkinen V, Goldsmith MR, Holm L, Auvinen P, Frilander MJ, Hanski I.

Nat Commun. 2014 Sep 5;5:4737. doi: 10.1038/ncomms5737.

7.

PLETHORA gradient formation mechanism separates auxin responses.

Mähönen AP, ten Tusscher K, Siligato R, Smetana O, Díaz-Triviño S, Salojärvi J, Wachsman G, Prasad K, Heidstra R, Scheres B.

Nature. 2014 Nov 6;515(7525):125-9. doi: 10.1038/nature13663. Epub 2014 Aug 24.

8.

Tipping elements in the human intestinal ecosystem.

Lahti L, Salojärvi J, Salonen A, Scheffer M, de Vos WM.

Nat Commun. 2014 Jul 8;5:4344. doi: 10.1038/ncomms5344.

9.

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men.

Salonen A, Lahti L, Salojärvi J, Holtrop G, Korpela K, Duncan SH, Date P, Farquharson F, Johnstone AM, Lobley GE, Louis P, Flint HJ, de Vos WM.

ISME J. 2014 Nov;8(11):2218-30. doi: 10.1038/ismej.2014.63. Epub 2014 Apr 24.

PMID:
24763370
10.

Transcriptomics and functional genomics of ROS-induced cell death regulation by RADICAL-INDUCED CELL DEATH1.

Brosché M, Blomster T, Salojärvi J, Cui F, Sipari N, Leppälä J, Lamminmäki A, Tomai G, Narayanasamy S, Reddy RA, Keinänen M, Overmyer K, Kangasjärvi J.

PLoS Genet. 2014 Feb 13;10(2):e1004112. doi: 10.1371/journal.pgen.1004112. eCollection 2014 Feb.

11.

The Arabidopsis thaliana cysteine-rich receptor-like kinases CRK6 and CRK7 protect against apoplastic oxidative stress.

Idänheimo N, Gauthier A, Salojärvi J, Siligato R, Brosché M, Kollist H, Mähönen AP, Kangasjärvi J, Wrzaczek M.

Biochem Biophys Res Commun. 2014 Mar 7;445(2):457-62. doi: 10.1016/j.bbrc.2014.02.013. Epub 2014 Feb 12.

PMID:
24530916
12.

Faecal microbiota composition and host-microbe cross-talk following gastroenteritis and in postinfectious irritable bowel syndrome.

Jalanka-Tuovinen J, Salojärvi J, Salonen A, Immonen O, Garsed K, Kelly FM, Zaitoun A, Palva A, Spiller RC, de Vos WM.

Gut. 2014 Nov;63(11):1737-45. doi: 10.1136/gutjnl-2013-305994. Epub 2013 Dec 5.

PMID:
24310267
13.

Duodenal microbiota composition and mucosal homeostasis in pediatric celiac disease.

Cheng J, Kalliomäki M, Heilig HG, Palva A, Lähteenoja H, de Vos WM, Salojärvi J, Satokari R.

BMC Gastroenterol. 2013 Jul 11;13:113. doi: 10.1186/1471-230X-13-113.

14.

Intestinal microbiota in healthy U.S. young children and adults--a high throughput microarray analysis.

Ringel-Kulka T, Cheng J, Ringel Y, Salojärvi J, Carroll I, Palva A, de Vos WM, Satokari R.

PLoS One. 2013 May 23;8(5):e64315. doi: 10.1371/journal.pone.0064315. Print 2013.

15.

Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data.

Lahti L, Salonen A, Kekkonen RA, Salojärvi J, Jalanka-Tuovinen J, Palva A, Orešič M, de Vos WM.

PeerJ. 2013 Feb 26;1:e32. doi: 10.7717/peerj.32. Print 2013.

16.

Genome sequencing of the plant pathogen Taphrina deformans, the causal agent of peach leaf curl.

Cissé OH, Almeida JM, Fonseca A, Kumar AA, Salojärvi J, Overmyer K, Hauser PM, Pagni M.

MBio. 2013 Apr 30;4(3):e00055-13. doi: 10.1128/mBio.00055-13.

17.

Intake of whole-grain and fiber-rich rye bread versus refined wheat bread does not differentiate intestinal microbiota composition in Finnish adults with metabolic syndrome.

Lappi J, Salojärvi J, Kolehmainen M, Mykkänen H, Poutanen K, de Vos WM, Salonen A.

J Nutr. 2013 May;143(5):648-55. doi: 10.3945/jn.112.172668. Epub 2013 Mar 20.

18.

Apoplastic and chloroplastic redox signaling networks in plant stress responses.

Sierla M, Rahikainen M, Salojärvi J, Kangasjärvi J, Kangasjärvi S.

Antioxid Redox Signal. 2013 Jun 1;18(16):2220-39. doi: 10.1089/ars.2012.5016. Epub 2013 Jan 8.

PMID:
23157163
19.

Targeted retrieval of gene expression measurements using regulatory models.

Georgii E, Salojärvi J, Brosché M, Kangasjärvi J, Kaski S.

Bioinformatics. 2012 Sep 15;28(18):2349-56. Epub 2012 Jun 27.

20.

Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome.

Vrieze A, Van Nood E, Holleman F, Salojärvi J, Kootte RS, Bartelsman JF, Dallinga-Thie GM, Ackermans MT, Serlie MJ, Oozeer R, Derrien M, Druesne A, Van Hylckama Vlieg JE, Bloks VW, Groen AK, Heilig HG, Zoetendal EG, Stroes ES, de Vos WM, Hoekstra JB, Nieuwdorp M.

Gastroenterology. 2012 Oct;143(4):913-6.e7. doi: 10.1053/j.gastro.2012.06.031. Epub 2012 Jun 20. Erratum in: Gastroenterology. 2013 Jan;144(1):250.

PMID:
22728514
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