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Items: 12

1.

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows.

Sallou O, Duek PD, Darde TA, Collin O, Lane L, Chalmel F.

Database (Oxford). 2016 May 12;2016. pii: baw070. doi: 10.1093/database/baw070. Print 2016.

2.

BioShaDock: a community driven bioinformatics shared Docker-based tools registry.

Moreews F, Sallou O, Ménager H, Le Bras Y, Monjeaud C, Blanchet C, Collin O.

F1000Res. 2015 Dec 14;4:1443. doi: 10.12688/f1000research.7536.1. eCollection 2015.

3.

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Di Genova A, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A.

Nucleic Acids Res. 2015 Jul 1;43(W1):W589-98. doi: 10.1093/nar/gkv350. Epub 2015 Apr 20.

4.

The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.

Darde TA, Sallou O, Becker E, Evrard B, Monjeaud C, Le Bras Y, Jégou B, Collin O, Rolland AD, Chalmel F.

Nucleic Acids Res. 2015 Jul 1;43(W1):W109-16. doi: 10.1093/nar/gkv345. Epub 2015 Apr 16.

5.

SRD: a Staphylococcus regulatory RNA database.

Sassi M, Augagneur Y, Mauro T, Ivain L, Chabelskaya S, Hallier M, Sallou O, Felden B.

RNA. 2015 May;21(5):1005-17. doi: 10.1261/rna.049346.114. Epub 2015 Mar 24.

6.

Community-driven development for computational biology at Sprints, Hackathons and Codefests.

Möller S, Afgan E, Banck M, Bonnal RJ, Booth T, Chilton J, Cock PJ, Gumbel M, Harris N, Holland R, Kalaš M, Kaján L, Kibukawa E, Powel DR, Prins P, Quinn J, Sallou O, Strozzi F, Seemann T, Sloggett C, Soiland-Reyes S, Spooner W, Steinbiss S, Tille A, Travis AJ, Guimera R, Katayama T, Chapman BA.

BMC Bioinformatics. 2014;15 Suppl 14:S7. doi: 10.1186/1471-2105-15-S14-S7. Epub 2014 Nov 27.

7.

High-resolution profiling of novel transcribed regions during rat spermatogenesis.

Chalmel F, Lardenois A, Evrard B, Rolland AD, Sallou O, Dumargne MC, Coiffec I, Collin O, Primig M, Jégou B.

Biol Reprod. 2014 Jul;91(1):5. doi: 10.1095/biolreprod.114.118166. Epub 2014 Apr 16.

8.

The GAG database: a new resource to gather genomic annotation cross-references.

Obadia T, Sallou O, Ouedraogo M, Guernec G, Lecerf F.

Gene. 2013 Sep 25;527(2):503-9. doi: 10.1016/j.gene.2013.06.063. Epub 2013 Jul 16.

PMID:
23872200
9.

The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes.

Ouedraogo M, Bettembourg C, Bretaudeau A, Sallou O, Diot C, Demeure O, Lecerf F.

PLoS One. 2012;7(11):e50653. doi: 10.1371/journal.pone.0050653. Epub 2012 Nov 28.

10.

Seqcrawler: biological data indexing and browsing platform.

Sallou O, Bretaudeau A, Roult A.

BMC Bioinformatics. 2012 Jul 24;13:175. doi: 10.1186/1471-2105-13-175.

11.

GPSy: a cross-species gene prioritization system for conserved biological processes--application in male gamete development.

Britto R, Sallou O, Collin O, Michaux G, Primig M, Chalmel F.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W458-65. doi: 10.1093/nar/gks380. Epub 2012 May 8.

12.

AnnotQTL: a new tool to gather functional and comparative information on a genomic region.

Lecerf F, Bretaudeau A, Sallou O, Desert C, Blum Y, Lagarrigue S, Demeure O.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W328-33. doi: 10.1093/nar/gkr361. Epub 2011 May 19.

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