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Results: 15

1.

Whole-genome sequencing of tibetan macaque (Macaca thibetana) provides new insight into the macaque evolutionary history.

Fan Z, Zhao G, Li P, Osada N, Xing J, Yi Y, Du L, Silva P, Wang H, Sakate R, Zhang X, Xu H, Yue B, Li J.

Mol Biol Evol. 2014 Jun;31(6):1475-89. doi: 10.1093/molbev/msu104. Epub 2014 Mar 18.

PMID:
24648498
[PubMed - in process]
Free PMC Article
2.

Sagace: a web-based search engine for biomedical databases in Japan.

Morita M, Igarashi Y, Ito M, Chen YA, Nagao C, Sakaguchi Y, Sakate R, Masui T, Mizuguchi K.

BMC Res Notes. 2012 Oct 31;5:604. doi: 10.1186/1756-0500-5-604.

PMID:
23110816
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Whole-genome sequencing and analysis of the Malaysian cynomolgus macaque (Macaca fascicularis) genome.

Higashino A, Sakate R, Kameoka Y, Takahashi I, Hirata M, Tanuma R, Masui T, Yasutomi Y, Osada N.

Genome Biol. 2012 Jul 2;13(7):R58. [Epub ahead of print]

PMID:
22747675
[PubMed - as supplied by publisher]
Free PMC Article
4.

Evolutionary growth process of highly conserved sequences in vertebrate genomes.

Ishibashi M, Noda AO, Sakate R, Imanishi T.

Gene. 2012 Aug 1;504(1):1-5. doi: 10.1016/j.gene.2012.05.003. Epub 2012 May 9.

PMID:
22580082
[PubMed - indexed for MEDLINE]
5.

H-DBAS: human-transcriptome database for alternative splicing: update 2010.

Takeda J, Suzuki Y, Sakate R, Sato Y, Gojobori T, Imanishi T, Sugano S.

Nucleic Acids Res. 2010 Jan;38(Database issue):D86-90. doi: 10.1093/nar/gkp984. Epub 2009 Dec 7.

PMID:
19969536
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

H-InvDB in 2009: extended database and data mining resources for human genes and transcripts.

Yamasaki C, Murakami K, Takeda J, Sato Y, Noda A, Sakate R, Habara T, Nakaoka H, Todokoro F, Matsuya A, Imanishi T, Gojobori T.

Nucleic Acids Res. 2010 Jan;38(Database issue):D626-32. doi: 10.1093/nar/gkp1020. Epub 2009 Nov 23.

PMID:
19933760
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

G-compass: a web-based comparative genome browser between human and other vertebrate genomes.

Kawahara Y, Sakate R, Matsuya A, Murakami K, Sato Y, Zhang H, Gojobori T, Itoh T, Imanishi T.

Bioinformatics. 2009 Dec 15;25(24):3321-2. doi: 10.1093/bioinformatics/btp594. Epub 2009 Oct 21.

PMID:
19846439
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs.

Takeda J, Suzuki Y, Sakate R, Sato Y, Seki M, Irie T, Takeuchi N, Ueda T, Nakao M, Sugano S, Gojobori T, Imanishi T.

Nucleic Acids Res. 2008 Nov;36(20):6386-95. doi: 10.1093/nar/gkn677. Epub 2008 Oct 5.

PMID:
18838389
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.

Genome Information Integration Project And H-Invitational 2, Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S, Shimada M, Tanino M, Koyanagi KO, Barrero RA, Gough C, Chun HW, Habara T, Hanaoka H, Hayakawa Y, Hilton PB, Kaneko Y, Kanno M, Kawahara Y, Kawamura T, Matsuya A, Nagata N, Nishikata K, Noda AO, Nurimoto S, Saichi N, Sakai H, Sanbonmatsu R, Shiba R, Suzuki M, Takabayashi K, Takahashi A, Tamura T, Tanaka M, Tanaka S, Todokoro F, Yamaguchi K, Yamamoto N, Okido T, Mashima J, Hashizume A, Jin L, Lee KB, Lin YC, Nozaki A, Sakai K, Tada M, Miyazaki S, Makino T, Ohyanagi H, Osato N, Tanaka N, Suzuki Y, Ikeo K, Saitou N, Sugawara H, O'Donovan C, Kulikova T, Whitfield E, Halligan B, Shimoyama M, Twigger S, Yura K, Kimura K, Yasuda T, Nishikawa T, Akiyama Y, Motono C, Mukai Y, Nagasaki H, Suwa M, Horton P, Kikuno R, Ohara O, Lancet D, Eveno E, Graudens E, Imbeaud S, Debily MA, Hayashizaki Y, Amid C, Han M, Osanger A, Endo T, Thomas MA, Hirakawa M, Makalowski W, Nakao M, Kim NS, Yoo HS, De Souza SJ, Bonaldo Mde F, Niimura Y, Kuryshev V, Schupp I, Wiemann S, Bellgard M, Shionyu M, Jia L, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Zhang Q, Go M, Minoshima S, Ohtsubo M, Hanada K, Tonellato P, Isogai T, Zhang J, Lenhard B, Kim S, Chen Z, Hinz U, Estreicher A, Nakai K, Makalowska I, Hide W, Tiffin N, Wilming L, Chakraborty R, Soares MB, Chiusano ML, Suzuki Y, Auffray C, Yamaguchi-Kabata Y, Itoh T, Hishiki T, Fukuchi S, Nishikawa K, Sugano S, Nomura N, Tateno Y, Imanishi T, Gojobori T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D793-9. Epub 2007 Dec 18.

PMID:
18089548
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees.

Matsuya A, Sakate R, Kawahara Y, Koyanagi KO, Sato Y, Fujii Y, Yamasaki C, Habara T, Nakaoka H, Todokoro F, Yamaguchi K, Endo T, Oota S, Makalowski W, Ikeo K, Suzuki Y, Hanada K, Hashimoto K, Hirai M, Iwama H, Saitou N, Hiraki AT, Jin L, Kaneko Y, Kanno M, Murakami K, Noda AO, Saichi N, Sanbonmatsu R, Suzuki M, Takeda J, Tanaka M, Gojobori T, Imanishi T, Itoh T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D787-92. Epub 2007 Nov 3.

PMID:
17982176
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Mapping of chimpanzee full-length cDNAs onto the human genome unveils large potential divergence of the transcriptome.

Sakate R, Suto Y, Imanishi T, Tanoue T, Hida M, Hayasaka I, Kusuda J, Gojobori T, Hashimoto K, Hirai M.

Gene. 2007 Sep 1;399(1):1-10. Epub 2007 Apr 20.

PMID:
17574350
[PubMed - indexed for MEDLINE]
12.

A web tool for comparative genomics: G-compass.

Fujii Y, Itoh T, Sakate R, Koyanagi KO, Matsuya A, Habara T, Yamaguchi K, Kaneko Y, Gojobori T, Imanishi T.

Gene. 2005 Dec 30;364:45-52. Epub 2005 Oct 5.

PMID:
16169162
[PubMed - indexed for MEDLINE]
13.

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-Kabata Y, Tanino M, Yura K, Miyazaki S, Ikeo K, Homma K, Kasprzyk A, Nishikawa T, Hirakawa M, Thierry-Mieg J, Thierry-Mieg D, Ashurst J, Jia L, Nakao M, Thomas MA, Mulder N, Karavidopoulou Y, Jin L, Kim S, Yasuda T, Lenhard B, Eveno E, Suzuki Y, Yamasaki C, Takeda J, Gough C, Hilton P, Fujii Y, Sakai H, Tanaka S, Amid C, Bellgard M, Bonaldo Mde F, Bono H, Bromberg SK, Brookes AJ, Bruford E, Carninci P, Chelala C, Couillault C, de Souza SJ, Debily MA, Devignes MD, Dubchak I, Endo T, Estreicher A, Eyras E, Fukami-Kobayashi K, Gopinath GR, Graudens E, Hahn Y, Han M, Han ZG, Hanada K, Hanaoka H, Harada E, Hashimoto K, Hinz U, Hirai M, Hishiki T, Hopkinson I, Imbeaud S, Inoko H, Kanapin A, Kaneko Y, Kasukawa T, Kelso J, Kersey P, Kikuno R, Kimura K, Korn B, Kuryshev V, Makalowska I, Makino T, Mano S, Mariage-Samson R, Mashima J, Matsuda H, Mewes HW, Minoshima S, Nagai K, Nagasaki H, Nagata N, Nigam R, Ogasawara O, Ohara O, Ohtsubo M, Okada N, Okido T, Oota S, Ota M, Ota T, Otsuki T, Piatier-Tonneau D, Poustka A, Ren SX, Saitou N, Sakai K, Sakamoto S, Sakate R, Schupp I, Servant F, Sherry S, Shiba R, Shimizu N, Shimoyama M, Simpson AJ, Soares B, Steward C, Suwa M, Suzuki M, Takahashi A, Tamiya G, Tanaka H, Taylor T, Terwilliger JD, Unneberg P, Veeramachaneni V, Watanabe S, Wilming L, Yasuda N, Yoo HS, Stodolsky M, Makalowski W, Go M, Nakai K, Takagi T, Kanehisa M, Sakaki Y, Quackenbush J, Okazaki Y, Hayashizaki Y, Hide W, Chakraborty R, Nishikawa K, Sugawara H, Tateno Y, Chen Z, Oishi M, Tonellato P, Apweiler R, Okubo K, Wagner L, Wiemann S, Strausberg RL, Isogai T, Auffray C, Nomura N, Gojobori T, Sugano S.

PLoS Biol. 2004 Jun;2(6):e162. Epub 2004 Apr 20. Erratum in: PLoS Biol. 2004 Jul;2(7):e256.

PMID:
15103394
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

[Occurrence of Listeria monocytogenes in pre-sliced vacuum-packaged].

Sakate RI, Aragon LC, Raghiante F, Landgraf M, Franco BD, Destro MT.

Arch Latinoam Nutr. 2003 Jun;53(2):184-7. Portuguese.

PMID:
14528609
[PubMed - indexed for MEDLINE]
15.

Analysis of 5'-end sequences of chimpanzee cDNAs.

Sakate R, Osada N, Hida M, Sugano S, Hayasaka I, Shimohira N, Yanagi S, Suto Y, Hashimoto K, Hirai M.

Genome Res. 2003 May;13(5):1022-6.

PMID:
12727913
[PubMed - indexed for MEDLINE]
Free PMC Article

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