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Results: 13

1.

Obesity-associated variants within FTO form long-range functional connections with IRX3.

Smemo S, Tena JJ, Kim KH, Gamazon ER, Sakabe NJ, Gómez-Marín C, Aneas I, Credidio FL, Sobreira DR, Wasserman NF, Lee JH, Puviindran V, Tam D, Shen M, Son JE, Vakili NA, Sung HK, Naranjo S, Acemel RD, Manzanares M, Nagy A, Cox NJ, Hui CC, Gomez-Skarmeta JL, Nóbrega MA.

Nature. 2014 Mar 20;507(7492):371-5. doi: 10.1038/nature13138. Epub 2014 Mar 12.

PMID:
24646999
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Beyond the ENCODE project: using genomics and epigenomics strategies to study enhancer evolution.

Sakabe NJ, Nobrega MA.

Philos Trans R Soc Lond B Biol Sci. 2013 Nov 11;368(1632):20130022. doi: 10.1098/rstb.2013.0022. Print 2013 Dec 19. Review.

PMID:
24218635
[PubMed - indexed for MEDLINE]
3.

Dual transcriptional activator and repressor roles of TBX20 regulate adult cardiac structure and function.

Sakabe NJ, Aneas I, Shen T, Shokri L, Park SY, Bulyk ML, Evans SM, Nobrega MA.

Hum Mol Genet. 2012 May 15;21(10):2194-204. doi: 10.1093/hmg/dds034. Epub 2012 Feb 10.

PMID:
22328084
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Transcriptional enhancers in development and disease.

Sakabe NJ, Savic D, Nobrega MA.

Genome Biol. 2012 Jan 23;13(1):238. doi: 10.1186/gb-2012-13-1-238.

PMID:
22269347
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genome-wide maps of transcription regulatory elements.

Sakabe NJ, Nobrega MA.

Wiley Interdiscip Rev Syst Biol Med. 2010 Jul-Aug;2(4):422-37. doi: 10.1002/wsbm.70. Review.

PMID:
20836039
[PubMed - indexed for MEDLINE]
6.

Genome-wide discovery of human heart enhancers.

Narlikar L, Sakabe NJ, Blanski AA, Arimura FE, Westlund JM, Nobrega MA, Ovcharenko I.

Genome Res. 2010 Mar;20(3):381-92. doi: 10.1101/gr.098657.109. Epub 2010 Jan 14.

PMID:
20075146
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens.

Almeida LG, Sakabe NJ, deOliveira AR, Silva MC, Mundstein AS, Cohen T, Chen YT, Chua R, Gurung S, Gnjatic S, Jungbluth AA, Caballero OL, Bairoch A, Kiesler E, White SL, Simpson AJ, Old LJ, Camargo AA, Vasconcelos AT.

Nucleic Acids Res. 2009 Jan;37(Database issue):D816-9. doi: 10.1093/nar/gkn673. Epub 2008 Oct 5.

PMID:
18838390
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Sequence features responsible for intron retention in human.

Sakabe NJ, de Souza SJ.

BMC Genomics. 2007 Feb 26;8:59.

PMID:
17324281
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A possible role of exon-shuffling in the evolution of signal peptides of human proteins.

Vibranovski MD, Sakabe NJ, de Souza SJ.

FEBS Lett. 2006 Mar 6;580(6):1621-4. Epub 2006 Feb 10.

PMID:
16487520
[PubMed - indexed for MEDLINE]
Free Article
10.

Signs of ancient and modern exon-shuffling are correlated to the distribution of ancient and modern domains along proteins.

Vibranovski MD, Sakabe NJ, de Oliveira RS, de Souza SJ.

J Mol Evol. 2005 Sep;61(3):341-50. Epub 2005 Jul 18.

PMID:
16034650
[PubMed - indexed for MEDLINE]
11.

A bioinformatics analysis of alternative exon usage in human genes coding for extracellular matrix proteins.

Sakabe NJ, Vibranovski MD, de Souza SJ.

Genet Mol Res. 2004 Dec 30;3(4):532-44.

PMID:
15688319
[PubMed - indexed for MEDLINE]
Free Article
12.

Detection and evaluation of intron retention events in the human transcriptome.

Galante PA, Sakabe NJ, Kirschbaum-Slager N, de Souza SJ.

RNA. 2004 May;10(5):757-65.

PMID:
15100430
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

ORESTES are enriched in rare exon usage variants affecting the encoded proteins.

Sakabe NJ, de Souza JE, Galante PA, de Oliveira PS, Passetti F, Brentani H, Osório EC, Zaiats AC, Leerkes MR, Kitajima JP, Brentani RR, Strausberg RL, Simpson AJ, de Souza SJ.

C R Biol. 2003 Oct-Nov;326(10-11):979-85.

PMID:
14744104
[PubMed - indexed for MEDLINE]
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