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Year Number of Results
2002 1
2003 1
2004 2
2005 1
2006 3
2007 5
2008 4
2009 6
2010 9
2011 6
2012 7
2013 2
2014 4
2015 2
2016 3
2017 8
2018 6
2019 6
2020 10
2021 4
2022 7
2023 4
2024 1

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98 results

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Page 1
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes.
Dentro SC, Leshchiner I, Haase K, Tarabichi M, Wintersinger J, Deshwar AG, Yu K, Rubanova Y, Macintyre G, Demeulemeester J, Vázquez-García I, Kleinheinz K, Livitz DG, Malikic S, Donmez N, Sengupta S, Anur P, Jolly C, Cmero M, Rosebrock D, Schumacher SE, Fan Y, Fittall M, Drews RM, Yao X, Watkins TBK, Lee J, Schlesner M, Zhu H, Adams DJ, McGranahan N, Swanton C, Getz G, Boutros PC, Imielinski M, Beroukhim R, Sahinalp SC, Ji Y, Peifer M, Martincorena I, Markowetz F, Mustonen V, Yuan K, Gerstung M, Spellman PT, Wang W, Morris QD, Wedge DC, Van Loo P; PCAWG Evolution and Heterogeneity Working Group and the PCAWG Consortium. Dentro SC, et al. Among authors: sahinalp sc. Cell. 2021 Apr 15;184(8):2239-2254.e39. doi: 10.1016/j.cell.2021.03.009. Epub 2021 Apr 7. Cell. 2021. PMID: 33831375 Free PMC article.
The evolutionary history of 2,658 cancers.
Gerstung M, Jolly C, Leshchiner I, Dentro SC, Gonzalez S, Rosebrock D, Mitchell TJ, Rubanova Y, Anur P, Yu K, Tarabichi M, Deshwar A, Wintersinger J, Kleinheinz K, Vázquez-García I, Haase K, Jerman L, Sengupta S, Macintyre G, Malikic S, Donmez N, Livitz DG, Cmero M, Demeulemeester J, Schumacher S, Fan Y, Yao X, Lee J, Schlesner M, Boutros PC, Bowtell DD, Zhu H, Getz G, Imielinski M, Beroukhim R, Sahinalp SC, Ji Y, Peifer M, Markowetz F, Mustonen V, Yuan K, Wang W, Morris QD; PCAWG Evolution & Heterogeneity Working Group; Spellman PT, Wedge DC, Van Loo P; PCAWG Consortium. Gerstung M, et al. Among authors: sahinalp sc. Nature. 2020 Feb;578(7793):122-128. doi: 10.1038/s41586-019-1907-7. Epub 2020 Feb 6. Nature. 2020. PMID: 32025013 Free PMC article.
Author Correction: The evolutionary history of 2,658 cancers.
Gerstung M, Jolly C, Leshchiner I, Dentro SC, Gonzalez S, Rosebrock D, Mitchell TJ, Rubanova Y, Anur P, Yu K, Tarabichi M, Deshwar A, Wintersinger J, Kleinheinz K, Vázquez-García I, Haase K, Jerman L, Sengupta S, Macintyre G, Malikic S, Donmez N, Livitz DG, Cmero M, Demeulemeester J, Schumacher S, Fan Y, Yao X, Lee J, Schlesner M, Boutros PC, Bowtell DD, Zhu H, Getz G, Imielinski M, Beroukhim R, Sahinalp SC, Ji Y, Peifer M, Markowetz F, Mustonen V, Yuan K, Wang W, Morris QD; PCAWG Evolution & Heterogeneity Working Group; Spellman PT, Wedge DC, Van Loo P; PCAWG Consortium. Gerstung M, et al. Among authors: sahinalp sc. Nature. 2023 Feb;614(7948):E42. doi: 10.1038/s41586-022-05601-4. Nature. 2023. PMID: 36697833 Free PMC article. No abstract available.
Computational pharmacogenotype extraction from clinical next-generation sequencing.
Shugg T, Ly RC, Osei W, Rowe EJ, Granfield CA, Lynnes TC, Medeiros EB, Hodge JC, Breman AM, Schneider BP, Sahinalp SC, Numanagić I, Salisbury BA, Bray SM, Ratcliff R, Skaar TC. Shugg T, et al. Among authors: sahinalp sc. Front Oncol. 2023 Jul 4;13:1199741. doi: 10.3389/fonc.2023.1199741. eCollection 2023. Front Oncol. 2023. PMID: 37469403 Free PMC article.
Emerging Topics in Cancer Evolution.
El-Kebir M, Morris Q, Oesper L, Sahinalp SC. El-Kebir M, et al. Among authors: sahinalp sc. Pac Symp Biocomput. 2022;27:397-401. Pac Symp Biocomput. 2022. PMID: 34890166 Free article.
Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes.
Reyna MA, Haan D, Paczkowska M, Verbeke LPC, Vazquez M, Kahraman A, Pulido-Tamayo S, Barenboim J, Wadi L, Dhingra P, Shrestha R, Getz G, Lawrence MS, Pedersen JS, Rubin MA, Wheeler DA, Brunak S, Izarzugaza JMG, Khurana E, Marchal K, von Mering C, Sahinalp SC, Valencia A; PCAWG Drivers and Functional Interpretation Working Group; Reimand J, Stuart JM, Raphael BJ; PCAWG Consortium. Reyna MA, et al. Among authors: sahinalp sc. Nat Commun. 2022 Dec 8;13(1):7566. doi: 10.1038/s41467-022-32334-9. Nat Commun. 2022. PMID: 36481610 Free PMC article. No abstract available.
An efficient genotyper and star-allele caller for pharmacogenomics.
Hari A, Zhou Q, Gonzaludo N, Harting J, Scott SA, Qin X, Scherer S, Sahinalp SC, Numanagić I. Hari A, et al. Among authors: sahinalp sc. Genome Res. 2023 Jan;33(1):61-70. doi: 10.1101/gr.277075.122. Epub 2023 Jan 19. Genome Res. 2023. PMID: 36657977 Free PMC article.
Fast intratumor heterogeneity inference from single-cell sequencing data.
Kızılkale C, Rashidi Mehrabadi F, Sadeqi Azer E, Pérez-Guijarro E, Marie KL, Lee MP, Day CP, Merlino G, Ergün F, Buluç A, Sahinalp SC, Malikić S. Kızılkale C, et al. Among authors: sahinalp sc. Nat Comput Sci. 2022 Sep;2(9):577-583. doi: 10.1038/s43588-022-00298-x. Epub 2022 Sep 8. Nat Comput Sci. 2022. PMID: 38177468 Free PMC article.
Identification of conserved evolutionary trajectories in tumors.
Hodzic E, Shrestha R, Malikic S, Collins CC, Litchfield K, Turajlic S, Sahinalp SC. Hodzic E, et al. Among authors: sahinalp sc. Bioinformatics. 2020 Jul 1;36(Suppl_1):i427-i435. doi: 10.1093/bioinformatics/btaa453. Bioinformatics. 2020. PMID: 32657374 Free PMC article.
Tumor Phylogeny Topology Inference via Deep Learning.
Sadeqi Azer E, Haghir Ebrahimabadi M, Malikić S, Khardon R, Sahinalp SC. Sadeqi Azer E, et al. Among authors: sahinalp sc. iScience. 2020 Oct 7;23(11):101655. doi: 10.1016/j.isci.2020.101655. eCollection 2020 Nov 20. iScience. 2020. PMID: 33117968 Free PMC article.
98 results